View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8569_low_34 (Length: 241)
Name: NF8569_low_34
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2424600 - 2424378
Alignment:
| Q |
1 |
tctctcaggaagattttttcatccaaaagtttcaaacacaagatacttcttaagaagtttgaatcaagttctactcgaactaatgtaatattaattttta |
100 |
Q |
| |
|
|||||| | |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2424600 |
tctctcggcaagattttttaatccacaagtttcgaacacaagatacttcttaagaagtttgaatcaagttctactcgaactaatgtaatattaattttca |
2424501 |
T |
|
| Q |
101 |
atgtttgtaacaactaattaccgatatgttttcgttcgggataaaacacaaagttagtaaagttttaagaaagtaaatctataccgtagcaccggttggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2424500 |
atgtttgtaacaactaattaccgatatgttctcgttcgggataaaacacaaagttagtaaagttttaagaaagtaaatctataccgtagcaccagttggg |
2424401 |
T |
|
| Q |
201 |
caactattgccggatcttttaca |
223 |
Q |
| |
|
||||| |||| |||||||||||| |
|
|
| T |
2424400 |
caactcttgctggatcttttaca |
2424378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 130
Target Start/End: Complemental strand, 2433291 - 2433174
Alignment:
| Q |
13 |
attttttcatccaaaagtttcaaacacaagatacttcttaagaagtttgaatcaagttctactcgaactaatgtaatattaatttttaatgtttgtaaca |
112 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| || ||||||| |||||||||||||||| ||||||||| |||||| |||| |||||||| |||||||||| |
|
|
| T |
2433291 |
attttttcatccacaagattccaacacaagttatttcttaaaaagtttgaatcaagttttactcgaaccaatgtattattgatttttaacgtttgtaaca |
2433192 |
T |
|
| Q |
113 |
actaattaccgatatgtt |
130 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
2433191 |
actaattaccaatatgtt |
2433174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University