View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_36 (Length: 236)
Name: NF8569_low_36
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42214377 - 42214588
Alignment:
| Q |
1 |
acttgaagaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtccaacatggttctccaatctcatcatataaggtaaattggggt |
100 |
Q |
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| T |
42214377 |
acttgaaaaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtccaacatggttctccaatctcatcatataaggtaaattggggt |
42214476 |
T |
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| Q |
101 |
accgaggttcttccttcagtctctacgtcttcattcactgaagcacattgtgaaaagccagatgttttttcagcagaacattggatagaaactgcagacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42214477 |
gccgaggttcttccttcagtctctacgtcttcattcactgaagcacattgtgaaaagccagatgttttttcagcagaacatcggatagaaactgcagaca |
42214576 |
T |
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| Q |
201 |
cagaagagttga |
212 |
Q |
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|||||||||||| |
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| T |
42214577 |
cagaagagttga |
42214588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 42207545 - 42207669
Alignment:
| Q |
2 |
cttgaagaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtccaacatggttctccaatctcatcatataaggtaaattggggta |
101 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| ||| ||| ||||||| ||||||||||||||||||| |||||| |||||||||| | |
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| T |
42207545 |
cttgaagaggaagacaacaagtggatttcagactcaaaacaagaactgaagtatgtccaagatggttctccaatctcatcttataagataaattggggca |
42207644 |
T |
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| Q |
102 |
ccgaggttcttccttcagtctctac |
126 |
Q |
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|||||||||||||||||||||||| |
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| T |
42207645 |
tcgaggttcttccttcagtctctac |
42207669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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