View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_4 (Length: 610)
Name: NF8569_low_4
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Complemental strand, 14272094 - 14271517
Alignment:
| Q |
1 |
tcaatgatgattctctgtattaaaattgtatagctattgctttgtggactttgtgattaaatttctttgtatcaaatgacataannnnnnn-aatcgcaa |
99 |
Q |
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| T |
14272094 |
tcaatgatgattctctctataaaaattgtatagctattgctttgtggactttgtgattaaatttctttgtatcaaataacataattttttttaatcgcaa |
14271995 |
T |
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| Q |
100 |
atgttagtaatttatattattagtaataataatgtaaa-ttcgagctcccttcaccttccttgatttgattttcaaacagcttgggatgggaagcgcgct |
198 |
Q |
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| T |
14271994 |
atgttagtaat----------------aataatgtaaaattcgagctcgcttcaccttccttgatttgattttcaaacagcttgggatgggaagcgcgct |
14271911 |
T |
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| Q |
199 |
cgaaacactatgtggacaagcagtaggagctggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgatactattttccatggcatttcca |
298 |
Q |
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| T |
14271910 |
cgaaacactatgtggacaagcagtaggagcaggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgatactattttccatggcatttcca |
14271811 |
T |
|
| Q |
299 |
ctatgccttttatacatcttcgccggatccgttctaaaattcataggacaaacaactgaaatatccgaggctgcaggaacatttgctttatatatgattc |
398 |
Q |
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| T |
14271810 |
ctatgccttttatacatcttcgccggatccattctaaaattcataggacaaacaactgaaatatccgaggccgcaggaacattcgctttatatatgattc |
14271711 |
T |
|
| Q |
399 |
cacaattatttgcttacgcgctgaattttcctgtcgcgaaatttctacaagcgcaaagcatggtgattgtcatcgcggttatatcgggagtggcaatggt |
498 |
Q |
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| T |
14271710 |
cacaattatttgcttacgcgctgaattttcctgtcgcgaaatttctacaagcgcaaagcatggtgattgtcatcgcggttatatcgggagtggcaatggt |
14271611 |
T |
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| Q |
499 |
gttgcatccggtgtttagttggttgttgatggttaaatttgggtggggattggtgggtgctgcggtgagtcttaatggctcatggtggttcatt |
592 |
Q |
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| T |
14271610 |
gttgcatccggtgtttagttggttgctgatggttaaatttgggtggggattggtgggtgctgcggtgagtcttaatggctcatggtggttcatt |
14271517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 29112249 - 29112155
Alignment:
| Q |
182 |
gggatgggaagcgcgctcgaaacactatgtggacaagcagtaggagctggaaaactcgacatgttaggaatatacatgcaaagatcatgggtgat |
276 |
Q |
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|||||||||||||| | || ||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
29112249 |
gggatgggaagcgcattggagacactatgtggacaagctttcggagcagggaaactagacatgttaggaatatacatgcaaagatcatggttgat |
29112155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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