View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_40 (Length: 216)
Name: NF8569_low_40
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_40 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 48025295 - 48025480
Alignment:
| Q |
18 |
catagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttgttgataata-tatgagtgtaagattttctgtt |
116 |
Q |
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| T |
48025295 |
catagtgtgtcaattttctatcgttttttgagttgagttgaattagtttataagttatgcttttgttgttgataataatatgagtgtaagattttctgtt |
48025394 |
T |
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| Q |
117 |
tgttgtgtgttgcaagttactgttaatctcatgttccttcctacttattttgtttacacatgtttgatattttgtttctgatgtccat |
204 |
Q |
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| T |
48025395 |
tgttgtg--ttgcaagttactgttaatctcatgttccttcctacttattttgtttacacatgtttgatattttgtttctattgtccat |
48025480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 48020518 - 48020615
Alignment:
| Q |
30 |
attttctattgttttt----tgagttgagttgaattagtttataagttat-gcttttgttgttgataatatatgagtgtaagattttctgtttgttgt |
122 |
Q |
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| T |
48020518 |
attttctattgtttttcaattgagttgaaatgaactagtttataagttatggtttttgtagttgataatttaagaatgtaacatttcatgtttgttgt |
48020615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 14066 - 14210
Alignment:
| Q |
18 |
catagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttgttgataatatatgagtgtaagattttctgttt |
117 |
Q |
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| T |
14066 |
catagtgtgtcaattttctatcattttttgagttgagttgaattagtttataagttatgcttttgttgttgataatatatgagtgtaagattttctgttt |
14165 |
T |
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| Q |
118 |
gttgtg--------tgttgcaagttactgttaatctcatgttcct |
154 |
Q |
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| T |
14166 |
gttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
14210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 51934896 - 51935040
Alignment:
| Q |
18 |
catagtgtgtcaattttctattgttttttgagttgagttgaattagtttataagttatgcttttgttgttgataatatatgagtgtaagattttctgttt |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
51934896 |
catagtgtgtcaattttctatcgttttttgagttgagttgaattagtttataagttatgtttttgttgttgataatatatgagtgtaagattttatgttt |
51934995 |
T |
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| Q |
118 |
gttgtg--------tgttgcaagttactgttaatctcatgttcct |
154 |
Q |
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| T |
51934996 |
gttgtgttgccatattgtgcaagttactgttaatctcatgttcct |
51935040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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