View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8569_low_41 (Length: 203)
Name: NF8569_low_41
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_41 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 27461937 - 27462108
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27461937 |
catcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
27462036 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||| |
|
|
| T |
27462037 |
cccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctg |
27462108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 27482076 - 27482247
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27482076 |
catcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
27482175 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
27482176 |
cccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctg |
27482247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 27521498 - 27521327
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521498 |
catcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
27521399 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
27521398 |
cccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg |
27521327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 18986037 - 18986208
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18986037 |
catcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctca |
18986136 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||||| || || ||||||||||||||||||||| |
|
|
| T |
18986137 |
cccgtaatggcttctccgccattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctg |
18986208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 1758085 - 1758256
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
1758085 |
catcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctca |
1758184 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||| |
|
|
| T |
1758185 |
cccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg |
1758256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 29425232 - 29425404
Alignment:
| Q |
3 |
tcactctcacaacaacactgtcaaacgccgttcacc---atcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
99 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29425232 |
tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
29425331 |
T |
|
| Q |
100 |
acccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||| |
|
|
| T |
29425332 |
atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg |
29425404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 29568532 - 29568361
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||| ||| || ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29568532 |
catcacactcacaaaaactctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctca |
29568433 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| || || |||||||||||||||||||||| |
|
|
| T |
29568432 |
cccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg |
29568361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 29569863 - 29569708
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29569863 |
catcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctca |
29569764 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctctt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
29569763 |
cccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgctctt |
29569708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 27918587 - 27918742
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
27918587 |
catcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctca |
27918686 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctctt |
156 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
27918687 |
cccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctctt |
27918742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 29168192 - 29168363
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
29168192 |
catcacactcacaacaactctgtcaaacgtcgttcaccatcatcatcttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctca |
29168291 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtctctg |
172 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||| || || ||||||||| |||||||||||| |
|
|
| T |
29168292 |
cccgtaatggcttctccaccattacacttcctttcagtctccgtgggaatgctcttagctgctgtgtctctg |
29168363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25518421 - 25518588
Alignment:
| Q |
1 |
catcactctcacaacaacactgtcaaacgccgttcaccatcatcatcatcttctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctca |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25518421 |
catcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctca |
25518520 |
T |
|
| Q |
101 |
cccgtaatggcttctctgccattacacttcctttcggtctccgcggcaaggctcttagccgctgtgtc |
168 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| || || || |||||| || |||||||| |
|
|
| T |
25518521 |
cccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctcttcgctgctgtgtc |
25518588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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