View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_7 (Length: 459)
Name: NF8569_low_7
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 196 - 450
Target Start/End: Original strand, 30452537 - 30452794
Alignment:
| Q |
196 |
ctatctgctatttaaattcagttgctttgtgtatttcttattttgatagaaaatttggggttttttaataataaaacacagtagtatgaatatggttaag |
295 |
Q |
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| T |
30452537 |
ctatctgctatttaaattcagttgctttgtgtatttcttattttgatagaaaatttggggttttttaataataaaacacagtagtatgaatatggttaag |
30452636 |
T |
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| Q |
296 |
gtgtatggaatcaatttatcacactttca---nnnnnnnnnngttctcttataataatttgataaaagtaatgagctttcactcgtgtatactaaggtat |
392 |
Q |
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| T |
30452637 |
gtgtatggaatcaatttatcgcactttcattttattttttttgttctcttttaataatttgataaaagtaatgagctttcactcgtgtatactaaggtat |
30452736 |
T |
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| Q |
393 |
gtggggatggtataaaattgcannnnnnnncgacatagaattgcatgttaagtattat |
450 |
Q |
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| T |
30452737 |
gtggggatggtataaaattgcattttttttcgacatagaattgcatgttaagtattat |
30452794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 197 - 414
Target Start/End: Original strand, 30482023 - 30482249
Alignment:
| Q |
197 |
tatctgctatttaaattcagttgctttgtgtatttcttattttgatagaaaatttggggttttttaataataaaac--acagtagtatgaatatggttaa |
294 |
Q |
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| T |
30482023 |
tatctgctatttaaatttagttg--ttgtgtacgtcttattttgatagaaaatttggggttttttaataataaaacataaagtaatatgaatatggataa |
30482120 |
T |
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| Q |
295 |
ggtgtatggaatcaatttatcacactttcannnnnnnnnngttctcttataataatttgataaaagtaatgagctttcactcgtgt----------atac |
384 |
Q |
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| T |
30482121 |
ggtgtaaggaatcaatttattgcattttca-cttttttttgttctcttttaataatttgataaaagttatgagctttcactcttgtgtattaatcaatac |
30482219 |
T |
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| Q |
385 |
taaggtatgtggggatggtataaaattgca |
414 |
Q |
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| T |
30482220 |
taaggtatgaggggatggtataaaattgca |
30482249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 30452377 - 30452480
Alignment:
| Q |
30 |
catgttgcattaatcgagcatgaaaactatattgactggtttgcttagtttggttacgttgtgaatcaaactaatcaaccactaaaatggaaatggaatc |
129 |
Q |
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| T |
30452377 |
catgttgcattaatcgagcatgaaaaccatattgactggtttggttag---------gttgtgaatcaaactaatcaaccactaaaatggaaatggaatc |
30452467 |
T |
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| Q |
130 |
cacaaatgctgag |
142 |
Q |
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| T |
30452468 |
cacaaatgctgag |
30452480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 30455418 - 30455480
Alignment:
| Q |
197 |
tatctgctatttaaattcagttgctttgtgtatttcttattttgatagaaaatttggggtttt |
259 |
Q |
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| T |
30455418 |
tatctgctgtttaaatttagttgttttgtttatttcttattttgatagaaaatttggggtttt |
30455480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Original strand, 30484137 - 30484170
Alignment:
| Q |
381 |
atactaaggtatgtggggatggtataaaattgca |
414 |
Q |
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| T |
30484137 |
atactgaggtatgtggggatggtataaaattgca |
30484170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 6173231 - 6173279
Alignment:
| Q |
335 |
gttctcttataataatttgataaaagtaatgagctttcactcgtgtata |
383 |
Q |
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| T |
6173231 |
gttctctttgaataatttgataaaagttatgagctttcacacttgtata |
6173279 |
T |
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