View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_8 (Length: 444)
Name: NF8569_low_8
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 37136435 - 37136865
Alignment:
| Q |
1 |
cagaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatc |
100 |
Q |
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| T |
37136435 |
cagaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatc |
37136534 |
T |
|
| Q |
101 |
ttcttgttaccctaagaagattgatgatccaaaccattatgattataatcttctagagaacaactctggttctgctaataatcacaacaccaatccatgt |
200 |
Q |
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| T |
37136535 |
ttcttgttaccctaagaagattgatgatccaaaccattatgattataatcttctagagaacaactctggttctgctaacaatcacaacaccaatccatgt |
37136634 |
T |
|
| Q |
201 |
ccacaattcaacttttccaatgatgaaaacattgagattaatgaaactcttgctttgcaaaaatcaccttcactttcaccttatccatct---tcatcaa |
297 |
Q |
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| T |
37136635 |
ccacaattcaacttttccaatgatgaaaacattgagattaatgaaactcttgctttgcaaaaatcaccttcactttcaccttatccatcttcatcatcaa |
37136734 |
T |
|
| Q |
298 |
atcttttcaaccagaattttactcctccaagtgattcacatgattaccaatactctgaaaatttgagctttgaacatcatggattcaatgcaggatctct |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136735 |
atcttttcaaccagaattttactcctccaagtgattcacatgattaccaatactctgaaaatttgagctttgaacatcatggattcaatgcaggatctct |
37136834 |
T |
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| Q |
398 |
gtatgattctgaaactcctgcttcatcttat |
428 |
Q |
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| T |
37136835 |
gtatgattctaaaactcctgcttcatcttat |
37136865 |
T |
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