View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8569_low_9 (Length: 441)
Name: NF8569_low_9
Description: NF8569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8569_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 29716127 - 29715712
Alignment:
| Q |
12 |
ggacatcacccaaaagacatcatctctttgcacctcttttctagatggagatgcaaattgtagccagtcttaatcttcaagattgaggacaaagtacttg |
111 |
Q |
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| T |
29716127 |
ggacctcacccaaaagacatcatctctttgcacctcttttctagatggagatgcaaattgtagccagtcttaattttcaagattgaggacaaagtacttg |
29716028 |
T |
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| Q |
112 |
ttttgcgcttaatcttaatcttgtaggtaaacaatctcttagcatccacannnnnnnnn--ggagagaattttagcatccacatgttatatacaaatttg |
209 |
Q |
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| T |
29716027 |
ttttgcgcttaatcttaatcttgtaggtaaacaatctcttagcatccaattttttttttttggagagaattttagcatccacatgttatatacaaatttg |
29715928 |
T |
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| Q |
210 |
aatatttattccgagttagcaaatagagaatatatatacttaaatgttccgcaaaatttcaggtctaaaatttccataggtgctcgaaatggttgtccga |
309 |
Q |
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| T |
29715927 |
aatatttattccgagttagcaaatagagaatatatatacttaaatgttccgcaaaatttcaggtctaaaatttccataggtgctcgaaatggttgtccga |
29715828 |
T |
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| Q |
310 |
agacaatcagagaaaatgtaattcgaagaatgcaatttccagaagtattgaagattcaaataactcattcaaaatgactgctatatgaggtgtgcaagag |
409 |
Q |
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| T |
29715827 |
agacaatcagagaaaatgt--ttcgaagaatgcaatttccagaagtattgaagattcaaataactcattcaaaatgactgctatatgaggtgtgcaagag |
29715730 |
T |
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| Q |
410 |
aagtttggaagttgtttg |
427 |
Q |
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| T |
29715729 |
aagtttggaagttgtttg |
29715712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 375
Target Start/End: Complemental strand, 29719210 - 29719014
Alignment:
| Q |
181 |
ttagcatccacatgttatatacaaatttgaatatttattccgagttagcaaatagagaatatata--tacttaaa--tgttccgcaaaatttcaggtcta |
276 |
Q |
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| T |
29719210 |
ttagcatctgcatgttatatgcaaatttcaatatttatttcgagttagcaagtagagaatgcatgcttagataatatttttcctcaaaatttcgcgtctg |
29719111 |
T |
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| Q |
277 |
aaatttccataggtgctcgaaatggttgtccgaagacaatcagagaaaatgtaattcgaagaatgcaatttccagaagtatt-gaagattcaaataactc |
375 |
Q |
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| T |
29719110 |
aaattttcataagtgctcgaaatggtcatccaaagacaatcagggcaaatg---ttcgaagaatgcaatttccataagtattcgaagattcaaataactc |
29719014 |
T |
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