View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_high_17 (Length: 219)
Name: NF8570_high_17
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5960736 - 5960938
Alignment:
| Q |
1 |
taaggacggttgttatacaaagagtgagatcaagaaagctgtcaaggatttacgttcctatgttcctggatggagagccatgcgttgtatggtcaatgtt |
100 |
Q |
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| T |
5960736 |
taaggacggttgttatacaaagagtgagatcaagaaagctgtcaaggatttacgttcctatgttcctggatggagagccatgcgttgtatggtcaatgtt |
5960835 |
T |
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| Q |
101 |
gatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatcttcttgtcaaagggtttggaaagtaactagtaatatatttga |
200 |
Q |
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| T |
5960836 |
gatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatcttcttgtcaaagggtttggaaagtaactagtaatatatgtga |
5960935 |
T |
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| Q |
201 |
att |
203 |
Q |
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||| |
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| T |
5960936 |
att |
5960938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 159
Target Start/End: Original strand, 5937717 - 5937812
Alignment:
| Q |
64 |
tcctggatggagagccatgcgttgtatggtcaatgttgatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatct |
159 |
Q |
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| T |
5937717 |
tcctggatggagggccaatcgttgtttggttaaagctgatttcaacaaagatggagaaatcagtggtgaggaaattgatactttaattgattatct |
5937812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 5948909 - 5949003
Alignment:
| Q |
65 |
cctggatggagagccatgcgttgtatggtcaatgttgatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatct |
159 |
Q |
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| T |
5948909 |
cctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagacggactaatcagtggcgaggaaatcgacactttagttgattatct |
5949003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 5954591 - 5954650
Alignment:
| Q |
100 |
tgatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatct |
159 |
Q |
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|||||||||||| || |||||||| ||||| |||||||| || |||||| |||||||||| |
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| T |
5954591 |
tgatgccaacaaagacggacaaatcagtggcgaggaaatcgacactttaattgattatct |
5954650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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