View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_high_9 (Length: 292)
Name: NF8570_high_9
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 55054233 - 55053957
Alignment:
| Q |
1 |
atcaccaccatctttgtttttgacggcactcccttttgacttattctgaataatgattgattcaaatgtggaaattaaaactgagttcttaaaggaactg |
100 |
Q |
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| T |
55054233 |
atcaccaccatctttgtttttgacggcattcccttttgacttattctgaataatgattgattcaaatgtggaaattaaaactgagttcttaaaggaactg |
55054134 |
T |
|
| Q |
101 |
acatatacatcaaaaccatgttaaaattaaaaacacacacacaatcgatgaacaatgatagtaaaggaacactgacaaaggcgttttaaatttgtatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55054133 |
acatatacatcaaaaccatgttaaaattaaaaacacacacacaatcgatgaacaatgatagtaaaggaacactgacaaaggcgttttaaatttgtatctc |
55054034 |
T |
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| Q |
201 |
agtacagtaataataaattaagaaagaaaaaccagtagcatattgatgaataattaaaagcgcattggcatctttct |
277 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55054033 |
agtacagtgataataaattaagaaagaaaaaccagtagcatattgatgaataattacaagcgcattggcatctttct |
55053957 |
T |
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