View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_13 (Length: 306)
Name: NF8570_low_13
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 56165387 - 56165629
Alignment:
| Q |
18 |
aagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtgttttgccttccaaatcgaaattcagtttcagcttcatgttgttca |
117 |
Q |
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| T |
56165387 |
aagtggaactttggaggttaatagcatattggtttacaccaagtctgttggtgtgttttgccttccaaatcgaaattcagtttcagcttcatgttgttca |
56165486 |
T |
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| Q |
118 |
acattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaagaaacctttcttcttctcaaccatcttttccatatgtgcttgca |
217 |
Q |
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| T |
56165487 |
acattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaagaaacctttcttcttctcaaccatcttttccatatgtgcttgca |
56165586 |
T |
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| Q |
218 |
tgacattgcactgactttgcagcctgtaaacatcttccttcag |
260 |
Q |
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| T |
56165587 |
tgacattgcactgactttgcagcctgtaaacatcttccttcag |
56165629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 74 - 260
Target Start/End: Original strand, 44263708 - 44263891
Alignment:
| Q |
74 |
tttgccttccaaatcgaaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaa |
173 |
Q |
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| T |
44263708 |
tttgccttccaaatccaaattcagtttcagcttcatcttgttcaacattctccatctctccg---atgcttttactaaaagcaagtttcttccatttgaa |
44263804 |
T |
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| Q |
174 |
gaaacctttcttcttctcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
260 |
Q |
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| T |
44263805 |
gaaacttttcttcttctcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcag |
44263891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 44262858 - 44262911
Alignment:
| Q |
26 |
ctttggaggttaa-tagcatattggtttacaccaagtctgttggtgtgttttgc |
78 |
Q |
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| T |
44262858 |
ctttggaggttaaatagcatattggtttacaccaagtctgttggtgtgttttgc |
44262911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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