View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_14 (Length: 294)
Name: NF8570_low_14
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35535429 - 35535708
Alignment:
| Q |
1 |
gtaaaggagacagtggcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactctcgcaata |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535429 |
gtaaaggagacagtagcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactctcgcaata |
35535528 |
T |
|
| Q |
101 |
aagctttcaagcaaccagcaattccatttttcaatgaaaactccattgatgaaagcatagccacatgacatccacgggatttcaggaaaatgccaagctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |
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| T |
35535529 |
aagctttcaagcaaccagcaattccatttttcaacgaaaactccattgatgaaagcatagccacatgacatccatgggatttcaagaatatgccaagctc |
35535628 |
T |
|
| Q |
201 |
ctcaaatgtcattatgtcatcgacaaactctatgtttcctgccaatcatagttcaatctc--aattttatatagagatat |
278 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35535629 |
ttcaaatgtcattatgtcatcaacaaactctatgtttcctgccaatcatagttcaatctcagaattttatatagagatat |
35535708 |
T |
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