View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_16 (Length: 292)
Name: NF8570_low_16
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 35512374 - 35512639
Alignment:
| Q |
9 |
agcagagatggttcatttcttctggtagccgaaacctcgatttgcaggattctgaggctttggctaaatggacctaatgttggccaaatcgatacttttg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35512374 |
agcaaagatggttcatttcttctggtagccgaaacctcgattagcaggattctgaggctttggcttaatggacctaatgttggccaaatcgatacttttg |
35512473 |
T |
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| Q |
109 |
ctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattccnnnnnnnctccttttacgaagtggatatc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35512474 |
ctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattccaaaaaaactccttttacgaagtggatatc |
35512573 |
T |
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| Q |
209 |
ttctaatctatgggctcgtaaagcattgttaaagcttagaaacttcaagccgttgcaagcgttgtt |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35512574 |
ttctaatctatgggctcgtaaagcattgttaaagcttagaaacttcaagcggttgcaagcgttgtt |
35512639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 35503742 - 35504003
Alignment:
| Q |
9 |
agcagagatggttcatttcttctggtagccgaaacctcgatttgcaggattctgaggctttggctaaatggacctaatgttggccaaatcgatacttttg |
108 |
Q |
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|||| |||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||| |||||| |||| ||||||| |||||||||||| |
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| T |
35503742 |
agcaaagatggttcatttcttctggtagctgaaacttcgacttgcaagattctgaggctttggcttcgtggaccaaatgctggccaagtcgatacttttg |
35503841 |
T |
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| Q |
109 |
ctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattccnnnnnnnctccttttacgaagtggatatc |
208 |
Q |
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| T |
35503842 |
ctgttcttccaggctttccagacaatgtaaggagaaattcagaagggcaattttgggttgctttgcatgccaaagaaactccttttgcaaagtggatgtc |
35503941 |
T |
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| Q |
209 |
ttctaatctatgggctcgtaaagcattgttaaagcttagaaacttcaagccgttgcaagcgt |
270 |
Q |
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||| ||||| |||||| |||||||||||| ||||||| ||||||||||| |||||| |||| |
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| T |
35503942 |
ttccaatctgtgggctggtaaagcattgtcaaagcttggaaacttcaagtggttgcatgcgt |
35504003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 35490907 - 35491076
Alignment:
| Q |
9 |
agcagagatggttcatttcttctggtagccgaaacctcgatttgcaggattctgaggctttggctaaatggacctaatgttggccaaatcgatacttttg |
108 |
Q |
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|||| |||||||||||||||||||||||| |||||||| | |||||| ||||| |||||||||| ||||||| || | ||| || || |||||||| |
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| T |
35490907 |
agcaaagatggttcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttg |
35491006 |
T |
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| Q |
109 |
ctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcattc |
178 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||| |||| |
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| T |
35491007 |
ttgatcttccaggttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattc |
35491076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 40161414 - 40161581
Alignment:
| Q |
9 |
agcagagatggttcatttcttctggtagccgaaacctcgatttgcaggattctgaggctttggctaaatggacctaatgttggccaaatcgatacttttg |
108 |
Q |
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|||| ||| |||| ||| ||||| |||| |||||||||| || | ||||||| | |||||||| |||| ||||||| ||| ||| || ||||||||| |
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| T |
40161414 |
agcaaagacggtttattccttctagtaggtgaaacctcgactttccggattcttcgactttggcttcatggccctaatgctggtcaagtcaatacttttg |
40161513 |
T |
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| Q |
109 |
ctgttcttccaggttttcccgacaatataaggagaaattcagaagggcacttttgggttgctttgcat |
176 |
Q |
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| T |
40161514 |
ccgttcttccaggttatccggacaatataaggagaaattcagatgggcagttttgggttgctttgcat |
40161581 |
T |
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