View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8570_low_18 (Length: 276)
Name: NF8570_low_18
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 24185965 - 24185730
Alignment:
| Q |
23 |
aataaaaaaggattaagagaagacaattatatatttattttattactcggagctccatgatattcagcatcttcttctgctccatcaccttctgactctg |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24185965 |
aataaaaaagaattaagagaagacaattatatatttattttattactcggagctccatgatattcagcatcttcttctgctccatcaccttctgaccctg |
24185866 |
T |
|
| Q |
123 |
ctcccgcagagggactagtagcggtccagtcctcgtgttttttcttgctgagagtgtggcgtaacttcttggccttctcctttactttggtgataactga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24185865 |
ctcccgcagagggactagtagcggtccaatcctcgtgttttttcttgctgagagtgtggcgtaacttcttggccttctcctttactttggtgataactga |
24185766 |
T |
|
| Q |
223 |
tttcttctgattctggccatggtcttcttctgagtc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24185765 |
tttcttctgattctggccatggtcttcttctgagtc |
24185730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University