View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_20 (Length: 260)
Name: NF8570_low_20
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 3283504 - 3283699
Alignment:
| Q |
1 |
taagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataattactattttgat |
100 |
Q |
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| T |
3283504 |
taagaaataataatgttcgcctctagaaagcacataaaaagtaagagataatactgtcatagaaaatctctgatttttgcttaataattactattttgat |
3283603 |
T |
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| Q |
101 |
caatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacctaaatattg |
196 |
Q |
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| T |
3283604 |
caatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacccaaatattg |
3283699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 3283735 - 3283783
Alignment:
| Q |
193 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgt |
241 |
Q |
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| T |
3283735 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgt |
3283783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 18633945 - 18633987
Alignment:
| Q |
55 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
97 |
Q |
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| T |
18633945 |
tgtcatagaaaaactctgatttttgcctaataattactatttt |
18633987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1175547 - 1175640
Alignment:
| Q |
1 |
taagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataattactatttt |
97 |
Q |
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| T |
1175547 |
taagaaataataatgtttgtctctacaaa--acagaaaaattaagagacaata-tgtcatagaaaaactctgaattttgcctaatacttactatttt |
1175640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 4701258 - 4701303
Alignment:
| Q |
104 |
tatacatcaatttatggttctaggttcgattccttgaacctaattt |
149 |
Q |
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| T |
4701258 |
tatacatcaagttatggttctaggtttgattccttaaacttaattt |
4701303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 1175744 - 1175780
Alignment:
| Q |
104 |
tatacatcaatttatggttctaggttcgattccttga |
140 |
Q |
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| T |
1175744 |
tatacatcaatttatagttctaggttcgattacttga |
1175780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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