View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_21 (Length: 254)
Name: NF8570_low_21
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 2182524 - 2182750
Alignment:
| Q |
20 |
cgtaacatatagatgatcaaatatctatcatttacattacagaagatttacatttcttttcaacgattgtctgaactcagcagatatctgcccttaggtt |
119 |
Q |
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| T |
2182524 |
cgtaacatatagatgatcaaatatctatcatttacattatagaagatttacatttcttttcaacgattgtctgaactcaacagatatctgcccttaggtt |
2182623 |
T |
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| Q |
120 |
ggaactgttctcaggattgaggatgcaaaaactgcaattaacgccggagctaaatttctaatgagtcctgcaaatgttaaggtttgaaattttatttaca |
219 |
Q |
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| T |
2182624 |
ggaactgttctcaggattgaggatgcaaaaactgcaattaaagccggggctaaatttctaatgagtcctgcaaatgttaaggtttgaaattttatttaca |
2182723 |
T |
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| Q |
220 |
tttactttataataattattgttgtta |
246 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
2182724 |
tttactttataattattattgttgtta |
2182750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 3574140 - 3574197
Alignment:
| Q |
168 |
gctaaatttctaatgagtcctgcaaatgttaaggtttgaaattttatttacatttact |
225 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
3574140 |
gctaaatttctaatgagtcctgcaattgttgaggtttgaatttttatttacatttact |
3574197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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