View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8570_low_28 (Length: 216)

Name: NF8570_low_28
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8570_low_28
NF8570_low_28
[»] chr2 (8 HSPs)
chr2 (18-201)||(44623612-44623795)
chr2 (91-203)||(44614464-44614576)
chr2 (126-195)||(39136280-39136349)
chr2 (126-194)||(39422493-39422561)
chr2 (126-195)||(39488194-39488263)
chr2 (128-195)||(39458208-39458275)
chr2 (124-190)||(39129487-39129553)
chr2 (126-168)||(39474281-39474323)
[»] chr8 (2 HSPs)
chr8 (41-200)||(40347260-40347419)
chr8 (50-195)||(44951310-44951455)
[»] chr7 (1 HSPs)
chr7 (126-195)||(19806641-19806710)
[»] chr5 (1 HSPs)
chr5 (144-192)||(17058843-17058891)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 44623795 - 44623612
Alignment:
Q  18 caaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattcttttcactctcaacttccttaacttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  44623795 caaagtccctcaataggccttccaattcaccctttttagattcaaactcatttacttgaccatcaagtatattcttttcagtctcaaattccttaacttg 44623696  T
Q  118 ggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttgatgtcc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  44623695 ggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttctacttgttgtcc 44623612  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 44614576 - 44614464
Alignment:
Q  91 cttttcactctcaacttccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttct 190  Q
    |||||||  ||||| ||||||||| | ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||||||    
T  44614576 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaattgcctctcttct 44614477  T
Q  191 acttgatgtccat 203  Q
    ||||  |||||||    
T  44614476 actttttgtccat 44614464  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 39136349 - 39136280
Alignment:
Q  126 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttg 195  Q
    ||||||| || ||||||||||||| |||||||||||||||||| ||| ||| || |||||||||||||||    
T  39136349 tattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctacttg 39136280  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 39422493 - 39422561
Alignment:
Q  126 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctactt 194  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| ||| ||| |  | ||||||||||||    
T  39422493 tattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 39488194 - 39488263
Alignment:
Q  126 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttg 195  Q
    ||||||| |||||||   |||||| ||||| |||||||||||||||| |||||| || ||||||||||||    
T  39488194 tattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttg 39488263  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 39458275 - 39458208
Alignment:
Q  128 ttttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttg 195  Q
    ||||| || |||| |||||||| |||||||||||||||||| ||| ||| || | |||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttg 39458208  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 39129553 - 39129487
Alignment:
Q  124 catattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttct 190  Q
    ||||||||| ||||||| | |||||| |||||||||||||||||| ||| ||| || | ||||||||    
T  39129553 catattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 39474281 - 39474323
Alignment:
Q  126 tattttctagctcttcgcagcacttctcaatatctctctttat 168  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||    
T  39474281 tattttcaagctcttcggagcactcctcaatatctctctttat 39474323  T

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Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 40347419 - 40347260
Alignment:
Q  41 aattcaccctttttagattcaaactcatttacttgaccatcaagtatattcttttcactctcaacttccttaacttgggtctccatattttctagctctt 140  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||| || ||||||||||||||||||||||||||||||||    
T  40347419 aattcaccctttttagattcaaactcatttactcgaccatcaagtatattcttttcagattcaagtttcttaacttgggtctccatattttctagctctt 40347320  T
Q  141 cgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttgatgtc 200  Q
     ||| |||||||||| | || |||| || ||||||| ||||||| ||| |||||| ||||    
T  40347319 tgcaacacttctcaacagctttcttaatggaccgcaatcgcctcacttttacttgttgtc 40347260  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 44951310 - 44951455
Alignment:
Q  50 tttttagattcaaactcatttacttgaccatcaagtatattcttttcactctcaacttccttaacttgggtctccatattttctagctcttcgcagcact 149  Q
    |||| |||||||||||| |||||| | |||  |||||||||||||| |  ||||| ||| ||||||||||||||| ||||||| ||||||||||||||||    
T  44951310 ttttcagattcaaactcctttactcggccaataagtatattctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcact 44951409  T
Q  150 tctcaatatctctctttatagaccgcagtcgcctctcttctacttg 195  Q
    ||| ||||||||||||||| | ||||| | ||||||||||||||||    
T  44951410 tcttaatatctctctttatcggccgcaattgcctctcttctacttg 44951455  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 19806710 - 19806641
Alignment:
Q  126 tattttctagctcttcgcagcacttctcaatatctctctttatagaccgcagtcgcctctcttctacttg 195  Q
    ||||||| || ||||||||||| | |||||||||||||||||| ||| ||| || |||||||||||||||    
T  19806710 tattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctacttg 19806641  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 17058891 - 17058843
Alignment:
Q  144 agcacttctcaatatctctctttatagaccgcagtcgcctctcttctac 192  Q
    ||||||| ||||||||||||||||||||| ||| |||| | ||||||||    
T  17058891 agcacttatcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

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