View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_3 (Length: 367)
Name: NF8570_low_3
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 79 - 364
Target Start/End: Complemental strand, 2183023 - 2182738
Alignment:
| Q |
79 |
tgatttctcccaattcttctacacagtcaaatgcaatggattgagcattaatattgcaggaataaatcatgatatcttttaacagtttgaaccggaaagt |
178 |
Q |
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| T |
2183023 |
tgatttctcctaattcttttagacagtcaaatgcaatggattgaacatttatattgcaggaataaatcatgaaatctgttaacagcttgaacctaaaagt |
2182924 |
T |
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| Q |
179 |
tgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaacaaaac |
278 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||| | |
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| T |
2182923 |
tgacacttacttcggttggagtcattgttccgggaatgtataaaatgtcaccaccttgaacataattcaaaatatcctgataaagaagtt-aaacaaagc |
2182825 |
T |
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| Q |
279 |
tgcatattggtaagacatcctagtatggcctcaaatacggaaatatgagattcaacaat-gcaaaagccaattctaacaacaataat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| ||||| || ||| ||||||||||||| |
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| T |
2182824 |
tgcatattggtaagacatcctagtatggcctcaaatactgaaatttgacagtcaataatctcaaaatcccattttaacaacaataat |
2182738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 3574441 - 3574329
Alignment:
| Q |
174 |
aaagttgacacttacttcggttggagtcattgttccgggaatatataaaatttcaccaccttgaacataatccaaaatatcctgataaacaagttcaaac |
273 |
Q |
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|||||||| |||| |||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |||| |
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| T |
3574441 |
aaagttgaaactttcttcagttggagtcattgtccgggggatatataaaatttcaccaccttgaacatagtccaaaatatattgat-aacaagttaaaac |
3574343 |
T |
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| Q |
274 |
aaaactgcatattg |
287 |
Q |
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|| ||||||||||| |
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| T |
3574342 |
aagactgcatattg |
3574329 |
T |
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