View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_4 (Length: 367)
Name: NF8570_low_4
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 37701725 - 37702075
Alignment:
| Q |
1 |
aacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataatactatttctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701725 |
aacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataatactatttctca |
37701824 |
T |
|
| Q |
101 |
acaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaatttcttaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701825 |
acaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaatttcttaagta |
37701924 |
T |
|
| Q |
201 |
aacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatcaagctttataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701925 |
aacaacattactccatatactatatcccctaataataacaagagtttatgatcccaattagagcaattaaaattaaactgaaatcaatcaagctttataa |
37702024 |
T |
|
| Q |
301 |
tgagnnnnnnncactcacatcaatgaaatcagtgagaaaacaagccggcat |
351 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37702025 |
tgagaaaaaaacactcacatcaatgaaatcagtgagaaaacaagccggcat |
37702075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 79
Target Start/End: Complemental strand, 10223519 - 10223490
Alignment:
| Q |
50 |
atgtaactaattattgtaactaactattac |
79 |
Q |
| |
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|
| T |
10223519 |
atgtaactaattattgtaactaactattac |
10223490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 14201304 - 14201342
Alignment:
| Q |
54 |
aactaattattgtaactaactattacaactaataatact |
92 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
14201304 |
aactaattattgtaactaactattacatctaataatact |
14201342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 29051325 - 29051289
Alignment:
| Q |
51 |
tgtaactaattattgtaactaactattacaactaata |
87 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
29051325 |
tgtaactaattattgtaactaactattacatctaata |
29051289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 486588 - 486634
Alignment:
| Q |
34 |
tctaacttaagtaacca-tgtaactaattattgtaactaactattac |
79 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||||||| |
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|
| T |
486588 |
tctaacttaactaaccagtgtaactgattattgtaactaactattac |
486634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 37864137 - 37864101
Alignment:
| Q |
51 |
tgtaactaattattgtaactaactattacaactaata |
87 |
Q |
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||||||||||||||||||| |||||||||| |||||| |
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|
| T |
37864137 |
tgtaactaattattgtaaccaactattacatctaata |
37864101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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