View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_7 (Length: 351)
Name: NF8570_low_7
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 335
Target Start/End: Complemental strand, 32812948 - 32812627
Alignment:
| Q |
24 |
atataattaattatgaaaaggttagtataatagaacataacatagtaaatgtaacaaatgaaaaattcagaacctctataggtaaagtttccatgcattt |
123 |
Q |
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| T |
32812948 |
atataattaattataaaaaggttagtataatagaacataacatagtaaatgtaacaaatgaaaaattcagaacctctataggtaaagtttccattcattt |
32812849 |
T |
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| Q |
124 |
cattggcttagttgacattagtaattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactcctacttcttaat |
223 |
Q |
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| T |
32812848 |
cattggcttagttgacattactaattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactactacttcttaat |
32812749 |
T |
|
| Q |
224 |
taaacatgataatcaaaggatctattaggcaatgtgagtgttagaatagcaaatccagtttgaaaat----------aaataaacaatcgatcacagaat |
313 |
Q |
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| T |
32812748 |
taaaaatgataatcaaaggatctattaggcattgtgtgtgttagaatagcaaatccagttttaaaataataaaaaagaaaacaacgatcgatcacaaaat |
32812649 |
T |
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| Q |
314 |
tcagccaattgtacttatatct |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
32812648 |
tcagccaattgtacttatatct |
32812627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 7901121 - 7901393
Alignment:
| Q |
20 |
aaatatataattaattatgaaaaggttagtataatagaacataacatagtaaatgtaacaaatgaaaaattcagaacctctataggtaaagtttccatgc |
119 |
Q |
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|||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| | |
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| T |
7901121 |
aaatatataactaattatgaaaaagttagaataatagaacataacatagtaaatgtaacaaatgaaaaattaacaacctctatatgtaaagtttccattc |
7901220 |
T |
|
| Q |
120 |
atttcattggcttagttgacattagtaattttcaaagttattaacatgttttgcaaatagttgtgtttgaagtttgtggcaataaattactcctacttct |
219 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||| || |||| ||||||||| || |||||| |
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| T |
7901221 |
atttcattggcttaattgacattactaattttcaaagttattaacatgacttgcaaagagtagtgtttgtagcttgttccaataaattgctactactt-- |
7901318 |
T |
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| Q |
220 |
taattaaacatgataatcaaaggatctattaggcaatgtgagtgttagaatagcaaatccagtttgaaaataaataaacaa |
300 |
Q |
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|||| || ||| | ||||||||| |||| ||||| |||||| ||||||||||||||| || ||||||| ||||||| |
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| T |
7901319 |
-aattgaaaatg-tgatcaaaggacctataaggcattgtgag----agaatagcaaatccatttctaaaataagtaaacaa |
7901393 |
T |
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