View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8570_low_8 (Length: 349)
Name: NF8570_low_8
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 330
Target Start/End: Original strand, 39630272 - 39630575
Alignment:
| Q |
22 |
cttggagcaaggtttcagtggcttag-agggaaatggtatc--gacaaagatgttaataaaagccattcaaacaagaaattttannnnnnnnatgaagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39630272 |
cttggagcaaggtttcagtggcttaggagggacatggtatatggacaaagatgttaataaaagccattcaaacaagaaattttattttttt-atgaagtt |
39630370 |
T |
|
| Q |
119 |
cgaggctcgaaatctaagaccatgagataaaggcaatacatgcacgaaattttannnnnnnnaattacgtcagttccatgctatcagacnnnnnnnnnnn |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
39630371 |
cgaggctcgaaatctaagaccatgagataaaggcaatacatgcacgaaattttattttttt-aattacgtcagttccatgctatcacacaaaaaacaaaa |
39630469 |
T |
|
| Q |
219 |
nggatcattgttatagttttcattatcagttctatatggactcaatgtcaaaccacaaccattagctcatcattaagttttctgtgatgcatctccatat |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
39630470 |
aggatcattgtta--gttttcattatcagttccatatggactcaacgtcaaaccacaaccattagctcatcatcaagttt----tgatgcatctccatat |
39630563 |
T |
|
| Q |
319 |
catcatccaatt |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39630564 |
catcatccaatt |
39630575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 28652323 - 28652243
Alignment:
| Q |
246 |
agttctatatggactcaatgtcaaaccacaaccattagctcatcattaagttttctgtgatgcatctccatatcatcatccaatt |
330 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
28652323 |
agttccatatggactaaatgttaaaccacaaccattagctaatcatcaagttttttgtgatgcatc----tatcatcatccaatt |
28652243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University