View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8570_low_9 (Length: 336)
Name: NF8570_low_9
Description: NF8570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8570_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 6425696 - 6425986
Alignment:
| Q |
20 |
ggttggcctattctcttacaaaatctagtggaccaatttgaatattttaaagtttttcaacaatgggaaacctttgaaggagagctttgctcttattatt |
119 |
Q |
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| T |
6425696 |
ggttggcctattctcttacaaaatctagtggaccaatttgaatattttaaagtttttcaacaatgggaaacctttgaaggagagctttgctcttattatt |
6425795 |
T |
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| Q |
120 |
tcttaattcaattggagaagcaattgtccaaggtcaaaacaaaacactcggaaattgatgctaaaataagctatgtctattccaaacatattaccacaca |
219 |
Q |
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| T |
6425796 |
tcttaattcaattggagaagcaattgtccaaggtcaaaacaaaacacttggaaattgatgctaaaataagctatgtctattccaaacatattaccacaca |
6425895 |
T |
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| Q |
220 |
caaaaatatgtttttgatatttt--tatgttttgtttacttcaaaatacaaatcttacctagtatagtagaaagttatgcagaacacgaaa |
308 |
Q |
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| T |
6425896 |
caaaaatatgtttttgatatttttatatgttttgtttacttcaaaatacaaatcttacctagtatagtagaaagttatgcagaacacgaaa |
6425986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 14819960 - 14820084
Alignment:
| Q |
172 |
aattgatgctaaaataagctatgtctattccaaacatattaccacacacaaaaatatgtttttgatatttt--tatgttttgtttacttcaaaatacaaa |
269 |
Q |
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|||||||||||||||||| | |||| ||||||||| ||||||||||||||| |||||||| ||||||||| |||| || ||||||||||||||| ||| |
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| T |
14819960 |
aattgatgctaaaataagttttgtcgattccaaacgtattaccacacacaattatatgtttctgatatttttatatgcttcgtttacttcaaaatataaa |
14820059 |
T |
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| Q |
270 |
tcttacctagtatagtagaaagtta |
294 |
Q |
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| T |
14820060 |
tcttaccgactataatagcaagtta |
14820084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 6394272 - 6394322
Alignment:
| Q |
118 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacaaaacactc |
168 |
Q |
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| T |
6394272 |
tttcttaattcaattggagaagcaattgtccaaggtcaaaacagaacactc |
6394322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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