View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8571_high_1 (Length: 423)
Name: NF8571_high_1
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 21 - 408
Target Start/End: Original strand, 1235649 - 1236023
Alignment:
| Q |
21 |
ggagtttctggagttgaatctgaaggtatttgtgaagctggagccggagttgaagctggagctggtgccggagccggagttggagcctcaatggtagctc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| || || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
1235649 |
ggagtttctggagttgaatctgaaggtatttgtgaagctggagc------------tggtgccggagccggagctggagttggagcctcaatggtagctc |
1235736 |
T |
|
| Q |
121 |
caattatatgagcctgaaataaaatcattcatgtaacattaagaaaggatataaagaattaatagaaaatcatgtaaataatttgttcaaatgcatgcaa |
220 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235737 |
ctattatatgagcctgaaataaaatcattcatgtaacattaa-aaaggatataaagaattaatagaaaatcatgtaaataatttgttcaaatgcatgcaa |
1235835 |
T |
|
| Q |
221 |
catcaagtttaaggttttaaaaaacaggcgttaccgtgaaaacggccggtataggacagtttatgccagatttatatgtgggaaggaaaatcacacgaaa |
320 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235836 |
catcaagtttaaggttttaaaaaacgggcgttaccgtgaaaacggccggtataggacagtttatgccagatttatatgtgggaaggaaaatcacacgaaa |
1235935 |
T |
|
| Q |
321 |
actccagatgccggattttggtcatcgcctcttctttatgtacagatcgttactccttcaattactctcttaattttggtgttgttat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1235936 |
actccagatgccggattttggtcatcgcctcttctttatctacagatcgttactccttcaattactctcttaatttttgtgttgttat |
1236023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 41968581 - 41968748
Alignment:
| Q |
18 |
gcaggagtttctggagttgaatctgaaggtatttgtgaagctggagccggagttgaagctggagctggtgccggagccggagttggagcctcaatggtag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||| |||||| |||| || || ||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
41968581 |
gcaggagtttctggagttgaatctgaagctgtagttgaagttggagctggagatggagatggagatggtgccggagctggagttggagcctcaatggtag |
41968680 |
T |
|
| Q |
118 |
ctccaattatatgagcctgaaataaaatcattcatg---taacattaagaaaggatataaagaattaat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
41968681 |
ctccaattatatgagcctgaaataaaatcattcatgtaataacattaa-aaaggatataaagaattaat |
41968748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 29522023 - 29521975
Alignment:
| Q |
335 |
attttggtcatcgcctcttctttatgtacagatcgttactccttcaatt |
383 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
29522023 |
attttggtcatcacctcttctttatttacagttcattactccttcaatt |
29521975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University