View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_high_3 (Length: 386)
Name: NF8571_high_3
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 29180892 - 29181249
Alignment:
| Q |
14 |
tttctcatcaaaaaacttcactacctcatcaaccctattcaaaaatccctccattggctcctttaactccgaattcgccatcaaaagaccgcgataagct |
113 |
Q |
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| T |
29180892 |
tttctcctcaaaaaacttcactacctcatcaaccctattcaaaaatccctccattggctcctttaactccgaattcgccatcaaaagaccgcgataagct |
29180991 |
T |
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| Q |
114 |
tccgaattaaacggatcttgctgcagagtaaattcaaatcctttcttagctaattcatgttcaccgttatgactatgcaaatgtgattttagtagcaaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29180992 |
tccgaattaaacggatcttgctgcagagtaaattcaaatcctttcttagctaattcatgttcaccgttatgactatgcaaatgtgattttagtagcaaca |
29181091 |
T |
|
| Q |
214 |
aatcaaattcctccggttcaagttccattaatcgttccacagcgcgaatcgcttcgcttagtttgcgtgctttcacgttttcctcaatcaaagaccgaag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29181092 |
aatcaaattcctccggttcaagttccattaatcgttccacagcgcgaatagcttcgcttagtttgcgtgctttcacgttttcctcaatcaaagaccgaag |
29181191 |
T |
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| Q |
314 |
tgcatttgcatcgttggaattttcaatcaatttgtcatcaattgtagtgttgttttct |
371 |
Q |
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| T |
29181192 |
tgcatttgcatcgttggaattttcaatcaatttgtcatcaattgtagtgttgttttct |
29181249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 12408158 - 12408114
Alignment:
| Q |
14 |
tttctcatcaaaaaacttcactacctcatcaaccctattcaaaaa |
58 |
Q |
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|||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
12408158 |
tttctcttcaaaaaacttcactacttcatcaaccctattaaaaaa |
12408114 |
T |
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