View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_high_4 (Length: 384)

Name: NF8571_high_4
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_high_4
NF8571_high_4
[»] chr1 (13 HSPs)
chr1 (1-384)||(2784566-2784950)
chr1 (3-55)||(28674812-28674864)
chr1 (3-86)||(2896085-2896168)
chr1 (3-46)||(34257914-34257957)
chr1 (3-49)||(44482242-44482288)
chr1 (3-48)||(1864882-1864927)
chr1 (1-58)||(23636041-23636098)
chr1 (4-48)||(13997896-13997940)
chr1 (1-49)||(29163382-29163430)
chr1 (9-49)||(30749858-30749898)
chr1 (9-49)||(30771309-30771349)
chr1 (9-49)||(34371731-34371771)
chr1 (5-49)||(48148038-48148082)
[»] chr8 (6 HSPs)
chr8 (3-97)||(14134711-14134805)
chr8 (3-49)||(4786339-4786385)
chr8 (3-49)||(13844597-13844643)
chr8 (3-37)||(31580140-31580174)
chr8 (3-48)||(11803271-11803316)
chr8 (9-49)||(26902176-26902216)
[»] chr3 (3 HSPs)
chr3 (3-55)||(7614410-7614462)
chr3 (3-49)||(28678315-28678361)
chr3 (10-55)||(8842348-8842393)
[»] chr7 (10 HSPs)
chr7 (3-86)||(27093377-27093460)
chr7 (3-86)||(27184841-27184924)
chr7 (3-49)||(3721105-3721151)
chr7 (3-48)||(23849460-23849505)
chr7 (9-49)||(39138462-39138502)
chr7 (3-49)||(19206062-19206108)
chr7 (3-49)||(24146828-24146874)
chr7 (4-49)||(22602711-22602756)
chr7 (9-58)||(22868060-22868109)
chr7 (9-49)||(18213034-18213074)
[»] chr4 (7 HSPs)
chr4 (3-86)||(9996852-9996935)
chr4 (3-50)||(5775358-5775405)
chr4 (3-49)||(8423719-8423765)
chr4 (3-49)||(13134462-13134508)
chr4 (9-54)||(19097890-19097935)
chr4 (3-55)||(30103352-30103403)
chr4 (9-49)||(44132645-44132685)
[»] chr5 (5 HSPs)
chr5 (3-49)||(22423813-22423859)
chr5 (11-97)||(42893380-42893466)
chr5 (3-48)||(17123060-17123105)
chr5 (3-56)||(28862317-28862370)
chr5 (3-55)||(17925167-17925219)
[»] chr6 (11 HSPs)
chr6 (3-48)||(9658891-9658936)
chr6 (3-71)||(2040576-2040644)
chr6 (3-58)||(13360364-13360419)
chr6 (3-45)||(4040478-4040520)
chr6 (3-49)||(7265594-7265640)
chr6 (1-71)||(7377989-7378059)
chr6 (3-49)||(9025495-9025541)
chr6 (3-49)||(14796191-14796237)
chr6 (3-48)||(7086807-7086852)
chr6 (1-49)||(8931603-8931651)
chr6 (1-49)||(26562699-26562747)
[»] scaffold0022 (1 HSPs)
scaffold0022 (3-71)||(90855-90923)
[»] chr2 (4 HSPs)
chr2 (3-79)||(37411215-37411291)
chr2 (9-79)||(20242698-20242768)
chr2 (9-49)||(34784983-34785023)
chr2 (1-41)||(41942115-41942155)
[»] scaffold0039 (1 HSPs)
scaffold0039 (3-50)||(84973-85020)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-46)||(44529-44574)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 2784566 - 2784950
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaatttgaggagtgtata 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2784566 aaaatttaagaaaatcacataattgagtataattatatgtgtcggtgtcagacacaacgtgtatccgacactaggacacacttaatttgagaagtgtata 2784665  T
Q  101 cgtgcttcatagtatcagagttaattaactatcaacaaaaagaataaacagaaaaccattcataaagctacattgacgagtgatatatgtatctcacaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2784666 cgtgcttcatagtatcagagttaattaactatcaacaaaaagcataaacagaaaaccattcataaagctacattgacgagtgatatatgtatctcacact 2784765  T
Q  201 tctcattattacacacattctgttttattatgcttttaagttttaacaa-accccaaaattccttacattgccactgctaacacagtcattttctgcagt 299  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2784766 tctcattattacacacattctgttttattatgtttttaagttttaacaagaccccaaaattccttacattgccactgctaacacaatcattttctgcagt 2784865  T
Q  300 tttctatgcatggagatttggataattcaaacatagtgagaattttccatcaccagcacaaacacaataacaattgtccaataac 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2784866 tttctatgcatggagatttggataattcaaacatagtgagaattttccatcaccagcacaaacacgataacaattgtccaataac 2784950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 28674812 - 28674864
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacac 55  Q
    ||||| ||||||| |||||||| ||||||||||||||||| ||||||| ||||    
T  28674812 aatttgagaaaattacataattcagtataattatatatgttggtgtcagacac 28674864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 2896168 - 2896085
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaat 86  Q
    ||||| |||||||||||||||| ||| ||  ||||||||||||||||| |||| || ||| ||||| ||  |||||||| ||||    
T  2896168 aatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaat 2896085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 34257957 - 34257914
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggt 46  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||    
T  34257957 aatttaataaaatcacataatttagtgtaattatatatgtcggt 34257914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 44482242 - 44482288
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  44482242 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 44482288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 1864927 - 1864882
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  1864927 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 1864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23636098 - 23636041
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaac 58  Q
    ||||||| ||||||| |||||||| ||| ||||| ||| ||||||||||| |||||||    
T  23636098 aaaatttgagaaaattacataattcagtgtaattgtatgtgtcggtgtcagacacaac 23636041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 13997896 - 13997940
Alignment:
Q  4 atttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    |||||| |||||||||||||| ||| ||||||||| |||||||||    
T  13997896 atttaaaaaaatcacataattcagtgtaattatatgtgtcggtgt 13997940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29163430 - 29163382
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||| ||||||||||||||| | | ||||||||| ||||||||||    
T  29163430 aaaatttaggaaaatcacataattcaatttaattatatgtgtcggtgtc 29163382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 30749858 - 30749898
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  30749858 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 30749898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 30771309 - 30771349
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  30771309 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 30771349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 34371731 - 34371771
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 34371771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 48148082 - 48148038
Alignment:
Q  5 tttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| ||||||| |||||| ||| ||||||||||||||||||||    
T  48148082 tttaaaaaaatcatataattcagtgtaattatatatgtcggtgtc 48148038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 14134711 - 14134805
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaatttgaggagtgt 97  Q
    ||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||  || |||| ||| ||||||| | ||||| |||||||||    
T  14134711 aatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgaggagtgt 14134805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 4786385 - 4786339
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  4786385 aatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtc 4786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13844643 - 13844597
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||||||| ||||||||| ||||||||||    
T  13844643 aatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtc 13844597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 31580174 - 31580140
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattata 37  Q
    |||||||||||||||||||||||||| ||||||||    
T  31580174 aatttaagaaaatcacataattgagtgtaattata 31580140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 11803271 - 11803316
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||||    
T  11803271 aatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 26902216 - 26902176
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  26902216 agaaaatcacataattcagtgtaattatatgtgtcggtgtc 26902176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 7614462 - 7614410
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacac 55  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  7614462 aatttaagaaaatcacataattcagtataattatatatgtcggtgtcgaacac 7614410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 28678315 - 28678361
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||||| |||||||||||||| ||||||||| ||| ||||||||||    
T  28678315 aatttaataaaatcacataatttagtataattgtatgtgtcggtgtc 28678361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 8842348 - 8842393
Alignment:
Q  10 gaaaatcacataattgagtataattatatatgtcggtgtcaaacac 55  Q
    |||||||||||||||  || ||||||||||||||||||||| ||||    
T  8842348 gaaaatcacataatttggtgtaattatatatgtcggtgtcagacac 8842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 27093460 - 27093377
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaat 86  Q
    |||||||||||||||||||||| ||| |||||||||  |||||||| | |||| || ||| |||||||||||||||||| ||||    
T  27093460 aatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaat 27093377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 27184841 - 27184924
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaat 86  Q
    |||||||||||||||||||||| ||| |||||||||  |||||||| | |||| || ||| |||||||||||||||||| ||||    
T  27184841 aatttaagaaaatcacataatttagtgtaattatatgcgtcggtgttagacacgacatgtgtccgacactaggacacacctaat 27184924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 3721105 - 3721151
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  3721105 aatttgagaaaatcacataatttagtataattatatgtgtcggtgtc 3721151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 23849505 - 23849460
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    |||||||||||| ||||||||| ||||||||||||| |||||||||    
T  23849505 aatttaagaaaaacacataattcagtataattatatgtgtcggtgt 23849460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 39138462 - 39138502
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  39138462 agaaaatcacataattcagtgtaattatatatgtcggtgtc 39138502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 19206062 - 19206108
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||||    
T  19206062 aatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 24146828 - 24146874
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| | ||||||||||| ||||||||||    
T  24146828 aattttagaaaatcacataattcaatataattatatgtgtcggtgtc 24146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 22602756 - 22602711
Alignment:
Q  4 atttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  22602756 atttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 22602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 22868060 - 22868109
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtcaaacacaac 58  Q
    |||||||||||||||| ||| ||||||||| |||| || |||||||||||    
T  22868060 agaaaatcacataattcagtgtaattatatgtgtcagtatcaaacacaac 22868109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 18213074 - 18213034
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtc 18213034  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 9996852 - 9996935
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaat 86  Q
    ||||| |||||||||||||||| ||||||||||||| | ||||||||| ||| |||  || ||||||||| | |||||| ||||    
T  9996852 aatttgagaaaatcacataattcagtataattatatgtctcggtgtcagacataacacgtgtccgacactggaacacacctaat 9996935  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 5775405 - 5775358
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtca 50  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||||    
T  5775405 aatttgagaaaatcacataattaagtgtaattatatgtgtcggtgtca 5775358  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 8423765 - 8423719
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| ||| |||||||| |||||||||||    
T  8423765 aatttgagaaaatcacataattcagtgtaattataaatgtcggtgtc 8423719  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 13134462 - 13134508
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  13134462 aatttaagaaaatcacataatttagtgtaattatatgtgtcgatgtc 13134508  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 19097935 - 19097890
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtcaaaca 54  Q
    |||||||||| ||||| ||||||||||||| |||||||||| ||||    
T  19097935 agaaaatcacgtaattcagtataattatatttgtcggtgtcgaaca 19097890  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 30103403 - 30103352
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacac 55  Q
    ||||| |||||||||||||||| ||| |||| |||| ||||||||||||||||    
T  30103403 aatttgagaaaatcacataatt-agtgtaatcatatgtgtcggtgtcaaacac 30103352  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 44132685 - 44132645
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||| ||||| ||||||||||||| ||||||||||    
T  44132685 agaaaatcacgtaattcagtataattatatgtgtcggtgtc 44132645  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 22423859 - 22423813
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  22423859 aatttgagaaaatcacataattcaatataattatatatgtcggtgtc 22423813  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 42893380 - 42893466
Alignment:
Q  11 aaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacacacttaatttgaggagtgt 97  Q
    |||||||||||||  ||| |||||| |  ||||||||||| |||||||  || |||||||| ||||||| | |||| ||||||||||    
T  42893380 aaaatcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgt 42893466  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 17123060 - 17123105
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    ||||| |||||||||||||||  |||| ||||||||||||||||||    
T  17123060 aatttgagaaaatcacataatcaagtacaattatatatgtcggtgt 17123105  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 28862317 - 28862370
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacaca 56  Q
    |||| |||||||||| |||||| |||||||||| || ||| |||||||||||||    
T  28862317 aattgaagaaaatcatataatttagtataattacatgtgttggtgtcaaacaca 28862370  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 17925219 - 17925167
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacac 55  Q
    |||||||||||||||||||||| | | |||| |||| |||||||||| |||||    
T  17925219 aatttaagaaaatcacataattcaatgtaataatatgtgtcggtgtcgaacac 17925167  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 9658891 - 9658936
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||||    
T  9658891 aatttaagaaaatcacataattcagtgtaattatatttgtcggtgt 9658936  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 2040644 - 2040576
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacac 71  Q
    ||||| |||||||||| ||||| |||| |||||||||| || |||||  ||||||| ||||||||||||    
T  2040644 aatttgagaaaatcacgtaattcagtaaaattatatatatcagtgtcggacacaacatgtatccgacac 2040576  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 13360419 - 13360364
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaac 58  Q
    ||||| |||||||||||||||| ||| ||||||||| | ||||||||| |||||||    
T  13360419 aatttgagaaaatcacataattcagtgtaattatatgtttcggtgtcagacacaac 13360364  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 4040478 - 4040520
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcgg 45  Q
    |||||||||||||| ||| ||| ||||||||||||||||||||    
T  4040478 aatttaagaaaatcgcattattcagtataattatatatgtcgg 4040520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 7265640 - 7265594
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  7265640 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 7265594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7377989 - 7378059
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacac 71  Q
    ||||||| |||||||||||||||| | | ||||||||| ||||||||||  |||| || || |||||||||    
T  7377989 aaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacac 7378059  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 9025541 - 9025495
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||||||||    
T  9025541 aatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtc 9025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 14796237 - 14796191
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||||||||| ||   |||||||||||||||||||    
T  14796237 aatttaagaaaatcacataattcagcgcaattatatatgtcggtgtc 14796191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 7086807 - 7086852
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgt 48  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  7086807 aatttgagaaaatcacataatttagtgtaattatatgtgtcggtgt 7086852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8931651 - 8931603
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||||| ||||||| |||||||| ||||||||||||| ||||| ||||    
T  8931651 aaaatttgagaaaataacataattcagtataattatatgtgtcgatgtc 8931603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26562699 - 26562747
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    ||||||| |||||||||||||||| ||| ||||||||| ||||| ||||    
T  26562699 aaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtc 26562747  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 90855 - 90923
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacac 71  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||| ||||| |||||||  || ||||||||    
T  90855 aatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacacaacacgtgtccgacac 90923  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 37411291 - 37411215
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacac 79  Q
    ||||| |||||||||||||||| ||| | ||||||| ||||| |||| ||||| ||| || ||||||||| ||||||    
T  37411291 aatttgagaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacacgacgcgtgtccgacactgggacac 37411215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 20242768 - 20242698
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtcaaacacaacgtgtatccgacactaggacac 79  Q
    |||||||||||||||| ||| ||||||||| ||||||||||  |||||||  || || ||||| |||||||    
T  20242768 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacac 20242698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34785023 - 34784983
Alignment:
Q  9 agaaaatcacataattgagtataattatatatgtcggtgtc 49  Q
    |||||||||||||||| ||| ||||||||| ||||||||||    
T  34785023 agaaaatcacataatttagtgtaattatatgtgtcggtgtc 34784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41942115 - 41942155
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatg 41  Q
    ||||||| ||||||| |||||||| ||||||||||||||||    
T  41942115 aaaatttgagaaaattacataattcagtataattatatatg 41942155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 85020 - 84973
Alignment:
Q  3 aatttaagaaaatcacataattgagtataattatatatgtcggtgtca 50  Q
    ||||||||||||||| ||||||  || |||||||||||||||||||||    
T  85020 aatttaagaaaatcatataattatgtgtaattatatatgtcggtgtca 84973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44574 - 44529
Alignment:
Q  1 aaaatttaagaaaatcacataattgagtataattatatatgtcggt 46  Q
    ||||||| |||||||||||||||| ||| ||||||||| |||||||    
T  44574 aaaatttgagaaaatcacataattcagtgtaattatatgtgtcggt 44529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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