View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_high_5 (Length: 366)

Name: NF8571_high_5
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_high_5
NF8571_high_5
[»] chr3 (20 HSPs)
chr3 (1-186)||(3344908-3345095)
chr3 (1-184)||(22397814-22398000)
chr3 (1-186)||(28418329-28418516)
chr3 (1-184)||(33957161-33957346)
chr3 (1-179)||(33955786-33955966)
chr3 (4-184)||(4066681-4066863)
chr3 (4-184)||(37964781-37964963)
chr3 (5-184)||(23302204-23302385)
chr3 (1-179)||(23302855-23303035)
chr3 (1-186)||(35350781-35350968)
chr3 (1-186)||(44516822-44517009)
chr3 (1-181)||(47334376-47334559)
chr3 (1-186)||(54610145-54610332)
chr3 (1-185)||(1002989-1003175)
chr3 (1-184)||(43844791-43844976)
chr3 (1-184)||(26706092-26706277)
chr3 (5-181)||(30106651-30106829)
chr3 (1-184)||(10122657-10122842)
chr3 (1-184)||(38190435-38190620)
chr3 (43-127)||(45583315-45583399)
[»] chr7 (14 HSPs)
chr7 (1-184)||(21954142-21954327)
chr7 (1-184)||(46804756-46804941)
chr7 (4-185)||(6612646-6612829)
chr7 (1-139)||(9179064-9179203)
chr7 (1-186)||(42049296-42049487)
chr7 (1-184)||(47400729-47400914)
chr7 (1-187)||(34643780-34643972)
chr7 (1-184)||(18784585-18784770)
chr7 (1-184)||(35113343-35113528)
chr7 (1-184)||(44045525-44045710)
chr7 (1-184)||(37316057-37316242)
chr7 (1-184)||(35504827-35505012)
chr7 (1-184)||(42046585-42046770)
chr7 (48-185)||(19297161-19297300)
[»] chr5 (14 HSPs)
chr5 (1-186)||(39565184-39565371)
chr5 (1-184)||(22496929-22497114)
chr5 (1-188)||(40830465-40830657)
chr5 (1-189)||(1598629-1598819)
chr5 (1-184)||(5812505-5812690)
chr5 (1-186)||(16478167-16478358)
chr5 (1-185)||(22386887-22387073)
chr5 (1-187)||(28969519-28969707)
chr5 (1-184)||(22721275-22721460)
chr5 (1-184)||(36789658-36789843)
chr5 (1-184)||(25336051-25336236)
chr5 (1-184)||(16475572-16475757)
chr5 (1-185)||(1212649-1212835)
chr5 (1-184)||(23107502-23107687)
[»] chr2 (9 HSPs)
chr2 (1-185)||(40263415-40263601)
chr2 (1-185)||(4651415-4651601)
chr2 (1-184)||(3554956-3555135)
chr2 (1-184)||(6904285-6904470)
chr2 (1-185)||(4720833-4721020)
chr2 (1-184)||(42224050-42224232)
chr2 (1-184)||(12256629-12256814)
chr2 (1-184)||(42842991-42843176)
chr2 (1-122)||(39122473-39122595)
[»] chr1 (17 HSPs)
chr1 (1-185)||(24775444-24775630)
chr1 (1-184)||(43643147-43643332)
chr1 (1-186)||(2023037-2023227)
chr1 (1-185)||(45536865-45537052)
chr1 (1-185)||(20274401-20274587)
chr1 (1-185)||(38984522-38984708)
chr1 (1-189)||(21332820-21333013)
chr1 (1-184)||(28645755-28645940)
chr1 (1-186)||(49004872-49005056)
chr1 (1-184)||(32523947-32524135)
chr1 (1-184)||(18410217-18410405)
chr1 (56-184)||(42829888-42830017)
chr1 (1-184)||(2840351-2840528)
chr1 (1-184)||(13496522-13496707)
chr1 (1-186)||(24455282-24455469)
chr1 (1-184)||(42435651-42435836)
chr1 (1-186)||(32049742-32049929)
[»] chr6 (7 HSPs)
chr6 (1-184)||(22510273-22510458)
chr6 (1-186)||(19420585-19420773)
chr6 (1-184)||(19420070-19420255)
chr6 (1-184)||(18903096-18903284)
chr6 (1-186)||(4271589-4271776)
chr6 (1-186)||(14175403-14175590)
chr6 (1-186)||(14179939-14180126)
[»] chr8 (14 HSPs)
chr8 (1-185)||(12501648-12501834)
chr8 (1-181)||(9220023-9220205)
chr8 (1-184)||(39622078-39622263)
chr8 (1-179)||(16888758-16888937)
chr8 (1-184)||(6416574-6416763)
chr8 (1-184)||(29089092-29089275)
chr8 (1-184)||(18385576-18385764)
chr8 (1-184)||(13279721-13279906)
chr8 (1-184)||(33441348-33441533)
chr8 (1-184)||(40557396-40557581)
chr8 (4-186)||(36896535-36896719)
chr8 (1-187)||(16428144-16428332)
chr8 (1-184)||(22513813-22513998)
chr8 (99-184)||(31726196-31726283)
[»] chr4 (13 HSPs)
chr4 (1-169)||(34802059-34802228)
chr4 (1-184)||(25887402-25887587)
chr4 (4-184)||(48425926-48426108)
chr4 (1-188)||(5943852-5944045)
chr4 (1-185)||(27024490-27024675)
chr4 (1-184)||(27071017-27071202)
chr4 (1-188)||(7509445-7509634)
chr4 (5-184)||(27151103-27151284)
chr4 (19-184)||(36353196-36353359)
chr4 (1-175)||(48945124-48945300)
chr4 (1-184)||(9768566-9768751)
chr4 (1-184)||(4943174-4943359)
chr4 (143-186)||(6243547-6243590)
[»] scaffold0368 (1 HSPs)
scaffold0368 (1-184)||(9888-10073)
[»] scaffold0014 (1 HSPs)
scaffold0014 (241-350)||(136039-136148)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-184)||(198872-199060)
[»] scaffold0088 (5 HSPs)
scaffold0088 (77-184)||(10643-10751)
scaffold0088 (78-175)||(1316-1414)
scaffold0088 (78-175)||(8706-8804)
scaffold0088 (78-175)||(25201-25299)
scaffold0088 (1-62)||(10912-10974)
[»] scaffold1289 (1 HSPs)
scaffold1289 (78-175)||(255-353)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 3344908 - 3345095
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||    
T  3344908 atgtacaatttaatgattaataaaaaatggttttaaataataattataattattaagcttgtattaaaatttaggggaaatttttggaacaaatgccaag 3345007  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    ||| ||||||||| |||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||    
T  3345008 taggattatgatggtgtggacatctttagagaagaggattttggaataggctatttctaaaaactttaaattgttagtataaagatat 3345095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 22398000 - 22397814
Alignment:
Q  1 atgtacaatttaatgattaataaaaa--cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgccta 98  Q
    ||||||||||||||||||||||||||  ||||||| || |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||| |    
T  22398000 atgtacaatttaatgattaataaaaaaacggtttttaataataataataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaa 22397901  T
Q  99 gtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||| ||||||||||||||||||||||||||| | |||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  22397900 gtaggattatgatgatgtggacatctttagaggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 22397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28418329 - 28418516
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |    
T  28418329 atgtacaatttaatgattaataaaaaatggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacg 28418428  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    ||| ||||||||||||||||||||||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||||||||    
T  28418429 taggattatgatgatgtggacatctttagaggagagaattttggaatatgctatttctaaaaactctaaattgttagtataaagatat 28418516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 33957161 - 33957346
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  33957161 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 33957260  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  |||||||||||||| |||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  33957261 taagattatgatgatgtgaacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 33957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 33955786 - 33955966
Alignment:
Q  1 atgtacaatttaatgattaataaaaacgg-ttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||||  | |||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  33955786 atgtacaatttaatgattaataaaaaatgatttttaataataattataattaataagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 33955885  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtata 179  Q
    ||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||    
T  33955886 taggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 184
Target Start/End: Original strand, 4066681 - 4066863
Alignment:
Q  4 tacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtag 102  Q
    |||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  4066681 tacaatttaatgattaataaaaaatggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtag 4066780  T
Q  103 aattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     ||||||||||||||||||||||||||| |||| | || ||||||  |||||||||||||||||||||||||| |||||||||    
T  4066781 gattatgatgatgtggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttaatataaagat 4066863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 37964963 - 37964781
Alignment:
Q  4 tacaatttaatgattaataaaaacg-gttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtag 102  Q
    |||||||||||||||||||||||   ||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  37964963 tacaatttaatgattaataaaaaatagtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtag 37964864  T
Q  103 aattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     ||||||||||||||||||||||||||| |||| | || |||||| ||||||||||||||||||||||||||| |||||||||    
T  37964863 gattatgatgatgtggacatctttagaggagagaattttggaataggctatttctaaaaactctaaattgttaatataaagat 37964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 23302385 - 23302204
Alignment:
Q  5 acaatttaatgattaataa-aaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtaga 103  Q
    ||||||||||| | ||||| |||||||||| || |||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||| |||||     
T  23302385 acaatttaatgttaaataagaaacggtttttaataataattataattattaagcttttattaacaattaggagaaatttttggaacaaatgccaagtagg 23302286  T
Q  104 attatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||| ||||||||| |||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  23302285 attaggatgatgtgaacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 23303035 - 23302855
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||||  |||||| || |  ||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| ||    
T  23303035 atgtacaatttaatgttaaataaaaaatggtttttaatagaaattataattattaagcttgcattaataattaggagaaatttttggaacaaatgccaag 23302936  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtata 179  Q
    ||| |||| |||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  23302935 taggattaggatgatgtggacatctttagaggagaggattttagaataagctatttctaaaaactctaaattgttagtata 23302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 35350781 - 35350968
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| |||||||||||||| |||||| ||||| ||    
T  35350781 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggagaaattttgggaacatatgccaag 35350880  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||  |||||||| ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||||    
T  35350881 taggcttttgatgaggtggacatacttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 35350968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 44516822 - 44517009
Alignment:
Q  1 atgtacaatttaatgattaata-aaaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | || | ||||||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  44516822 atgtacaatttaatgttaaaaagaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 44516921  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||||    
T  44516922 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 44517009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47334376 - 47334559
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataatt-ataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgccta 98  Q
    ||||||||||||||||||||||||||  |||||| || ||||||| ||||||| |||| ||||||||||| || |||||||||||||||||||||| | |    
T  47334376 atgtacaatttaatgattaataaaaaatggtttttaataataatttataattattaagtttgtattaaaaattgggagaaatttttggaacaaatgtcaa 47334475  T
Q  99 gtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaa 181  Q
    |||| |||||||||||||||| ||||||||| ||||| | ||  |||||| ||||||| || ||||||||||| |||| |||||    
T  47334476 gtaggattatgatgatgtggatatctttagataagagaattttagaataaactatttccaataactctaaattattagaataaa 47334559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 54610332 - 54610145
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  54610332 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 54610233  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||| ||| |||||||||||||||||||||||||||    
T  54610232 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagatat 54610145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1002989 - 1003175
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||| ||||||| | ||||||||  |||||| || |||||||| ||||| |||||||||||||||| |||||||||||||| |||||| ||||| ||    
T  1002989 atgtacagtttaatgttaaataaaaaatggtttttaataataattaaaattattaagcttgtattaaaaattaggagaaattttgggaacatatgccaag 1003088  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    |||  || |||||| ||||||||  |||||||| ||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||    
T  1003089 taggcttttgatgaggtggacattcttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 1003175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 43844976 - 43844791
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  43844976 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 43844877  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||| ||| |||||||||||||||||||||||||    
T  43844876 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagat 43844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26706092 - 26706277
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| |||||||||||||| |||||| ||||| ||    
T  26706092 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggagaaattttgggaacatatgccaag 26706191  T
Q  100 tagaattatgatgatgtggacatctttagagaagag-gattgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||  |||||| | ||  |||   ||||  |||||||||| |||||||||||||||||||||||||    
T  26706192 taggcttttgatgaggtggacattcttagaggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagat 26706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 30106829 - 30106651
Alignment:
Q  5 acaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtaga 103  Q
    ||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| || || |||||     
T  30106829 acaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaagttaggaggaattttgggaacatataccaagtagg 30106730  T
Q  104 attatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaa 181  Q
     || |||||| ||||| ||| |||||| | ||| ||| | |||| ||||||||||| ||||||||||||||||||||||    
T  30106729 cttttgatgaggtggatatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 30106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10122657 - 10122842
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||| ||||||||||| ||||||| |||||  |||||| ||||| ||    
T  10122657 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaaggttgtattaaaaattaggaggaatttcgggaacatatgccaag 10122756  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || ||||||  |||||||||||| || | ||| |||   |||| ||||||||||| |||||||||||||||||||||||||    
T  10122757 taggcttttgatgagatggacatctttaaaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 10122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 38190435 - 38190620
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||  | |||||||| || ||||  | |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  38190435 atgtacaatttaatcttaaataaaaaacgatttttgataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 38190534  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| |||   |||| ||||||||||| |||||||||||||||||||||||||    
T  38190535 taggcttttgatgaggtggacatccttagaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 45583315 - 45583399
Alignment:
Q  43 ttataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtagaattatgatgatgtggacatcttta 127  Q
    ||||||||| |||| ||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45583315 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaaatgccaagtagaattatgatgatgtggacatcttta 45583399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 21954142 - 21954327
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||    
T  21954142 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaattttttggaacaaatgccaag 21954241  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  21954242 taggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 21954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 46804941 - 46804756
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||| ||||||||||||||||| | ||||| || |||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||    
T  46804941 atgtacaaattaatgattaataaaaaacagtttttaataataattataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaag 46804842  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  46804841 tatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 46804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 6612829 - 6612646
Alignment:
Q  4 tacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtag 102  Q
    |||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  6612829 tacaatttaatgattaataaaaaatggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtag 6612730  T
Q  103 aattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
     ||||||||||||||||||||||||||| |||| | || |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  6612729 gattatgatgatgtggacatctttagaggagagaattttggaataggctatttctaaaaactctaaagtgttaatataaagata 6612646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 9179064 - 9179203
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||| ||    
T  9179064 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattatgagaaatttttggaacaaaagccaag 9179163  T
Q  100 tagaattatgatgatgtggacatctttagagaagaggatt 139  Q
    || |||||||||||||||||||||||||||||||||||||    
T  9179164 taaaattatgatgatgtggacatctttagagaagaggatt 9179203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42049487 - 42049296
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgc 95  Q
    |||||| |||||||||||||||||||  |||||| || |||| ||||    ||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  42049487 atgtaccatttaatgattaataaaaaatggtttttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgc 42049388  T
Q  96 ctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    | | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||||    
T  42049387 caattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 42049296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 47400729 - 47400914
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||||||||| |||| || |||||| | |||||||||||||||||| |||||||| |     
T  47400729 atgtacaatttaatgttaaataaaaaacggtttttaataataattataattattaagtttatattaacaattaggagaaatttttggagcaaatgccaaa 47400828  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||  |||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||    
T  47400829 tagcatttggatgatgtggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 47400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 34643780 - 34643972
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgc 95  Q
    |||||| ||||||||||||||||||| | ||||| || |||| ||||    ||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  34643780 atgtaccatttaatgattaataaaaaacagtttttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgc 34643879  T
Q  96 ctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatata 187  Q
    | | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||| |||||    
T  34643880 caattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaaaatata 34643972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18784585 - 18784770
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  18784585 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 18784684  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  18784685 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 18784770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35113528 - 35113343
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  35113528 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 35113429  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  35113428 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 44045525 - 44045710
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  44045525 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 44045624  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  44045625 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44045710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 37316057 - 37316242
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||| ||||||||| ||||||| |||||| |||||| ||||| ||    
T  37316057 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagctggtattaaaaattaggaggaattttaggaacatatgccaag 37316156  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  37316157 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35505012 - 35504827
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||  | |||||||| || ||||  | |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  35505012 atgtacaatttaatcttaaataaaaaacgatttttgataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 35504913  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| ||| |||||| ||||||||| |||||| | ||| ||| | |||| |||||| |||| |||||||||||||||||||||||||    
T  35504912 taggattttgatgaggtggacatccttagaggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagat 35504827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 42046770 - 42046585
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  42046770 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 42046671  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  42046670 taggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42046585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 19297161 - 19297300
Alignment:
Q  48 attactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga--ttgggaat 145  Q
    |||| ||| |||| ||||||| ||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||||| ||||||   | |||||    
T  19297161 attattaatcttgcattaaaaattaggagaaatttttggaacaaatgccaaataggattatgatgaggtggacatctttagaggagaggaatcttggaat 19297260  T
Q  146 aagctatttctaaaaactctaaattgttagtataaagata 185  Q
         |||| ||||||||||||| ||||||||||||||||    
T  19297261 ggtgcatttttaaaaactctaaaatgttagtataaagata 19297300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 39565184 - 39565371
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||| |||||||| |  |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |    
T  39565184 atgtacaatttaatgattaataaaaaacggtttttattaataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacg 39565283  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    ||| ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  39565284 taggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 39565371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 22496929 - 22497114
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |     
T  22496929 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaaa 22497028  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||||||||||||||||| |||| ||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  22497029 taggattatgatgatgtggacacctttggaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 40830657 - 40830465
Alignment:
Q  1 atgtacaatttaatgattaataaaaac--ggttttaa--acaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||   | ||||||  | |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  40830657 atgtacaatttaatgattaataaaaaacagtttttaataataataataataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgcc 40830558  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatatat 188  Q
     ||||| ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40830557 aagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatatat 40830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 1598629 - 1598819
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||||||||||||| | ||||| || |||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  1598629 atgtacaatttaatgattaataaaaaacagtttttaataataataataataattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 1598728  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatatatt 189  Q
    ||  |||||||||||||||||||| |||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  1598729 tatgattatgatgatgtggacatcattagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatttatt 1598819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5812505 - 5812690
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||| ||||||||||||||||| | ||||| || |||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||    
T  5812505 atgtacaaattaatgattaataaaaaacagtttttaataataattataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaag 5812604  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  5812605 tatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 5812690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 16478358 - 16478167
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgc 95  Q
    |||||| |||||||||||||||||||  |||||| || |||| ||||    ||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  16478358 atgtaccatttaatgattaataaaaaatggtttttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgc 16478259  T
Q  96 ctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    | | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||||    
T  16478258 caattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 16478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 22386887 - 22387073
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||| ||||| | |||||||| ||| ||| || |||||||||||||| |||||||| ||| | | |||||||||||||||| |||||||||| ||    
T  22386887 atgtacaatataatgttaaataaaaaacggattttaataataattataattattaagcttgcattcacaattaggagaaatttttgaaacaaatgccaag 22386986  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| |||| ||| |||||||  ||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  22386987 taggattaggataatgtggatgtctttagaggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 22387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 28969519 - 28969707
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||  ||    
T  28969519 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgctaag 28969618  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatata 187  Q
    |||  || |||||| |||||||||||||||||| ||| ||| | | || ||||||||||||||||||||||||||||||||||||||||    
T  28969619 taggcttttgatgaggtggacatctttagagaaaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagatata 28969707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 22721275 - 22721460
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  22721275 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 22721374  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  22721375 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 22721460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 36789658 - 36789843
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| || |||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  36789658 atgtacaatttaatgctaaataaaaaacgatttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 36789757  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  36789758 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 36789843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 25336236 - 25336051
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||| ||||||||||| ||||||| |||||| |||||| ||||  ||    
T  25336236 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaaggttgtattaaaaattaggaggaattttgggaacatatgctaag 25336137  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | ||||  |||||||||| |||||||||||||||||||||||||    
T  25336136 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 16475757 - 16475572
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  16475757 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 16475658  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  16475657 taggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 16475572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 1212649 - 1212835
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  1212649 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 1212748  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| ||||||| ||||||||||||||||||    
T  1212749 taggtttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagata 1212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 23107502 - 23107687
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| || |||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  23107502 atgtacaatttaatgttaaataaaaaacgatttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 23107601  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| |||| |||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  23107602 taggcttttgatgaggtgggcatccttagaggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 40263601 - 40263415
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  40263601 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 40263502  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| ||||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||||||||||| ||||||||||    
T  40263501 taggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagata 40263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 4651415 - 4651601
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||| |||||||||||||||||||| | ||||| || |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  4651415 atgtagaatttaatgattaataaaaaacagtttttaataataattataattattaagcttgtattaaaaattaggagaaatctttggaacaaatgccaag 4651514  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| ||||||||||||||||||||||||||| |||||| || | ||||  || ||||||||||||||||||||||||||||||||||    
T  4651515 taggattatgatgatgtggacatctttagaggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagata 4651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3554956 - 3555135
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| |||||||      |||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||| ||    
T  3554956 atgtacaatttaatgttaaataaaaaacggtttt------taattataattattaagcttgtattaacaattaggagaattttttggaacaaatgccaag 3555049  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||| |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  3555050 taggattaggatgatgtggacatctttagaggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 3555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6904470 - 6904285
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||||  |||||| || ||||| |||||||| |||||||||||||||| ||||||| |||||||| |||||||||| ||    
T  6904470 atgtacaatttaatgttaaataaaaaatggtttttaataataactataattattaagcttgtattaaaaattaggaggaatttttgaaacaaatgccaag 6904371  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| ||||||| ||||||||||||||||||| |||| | ||  ||||| |||||||||||||||||||||||||||||||||||||    
T  6904370 taggattatgaagatgtggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 4720833 - 4721020
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggtttt-aaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgccta 98  Q
    ||||||||||||||| | |||||||| ||||||| ||| ||||| |||||||| |||||||||||||||| ||||||| |||||||| |||||||| | |    
T  4720833 atgtacaatttaatgttaaataaaaaacggtttttaaataataactataattattaagcttgtattaaaaattaggaggaatttttgaaacaaatgtcaa 4720932  T
Q  99 gtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    |||| ||||| ||||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  4720933 gtaggattataatgatgtggacatctttagaggagagaattttagaataagctatttctaaaaactctaaattcttagtataaagata 4721020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 42224232 - 42224050
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||| ||||||||| | |||||||| ||||||| || |||||||||||||| |||||||||||||| | || ||| |||||||||||||||||||| ||    
T  42224232 atgtataatttaatgttaaataaaaaacggtttttaataataattataattattaagcttgtattaataattggga-aaatttttggaacaaatgccaag 42224134  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||| ||||||||||||||||||| |  |||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  42224133 taggattaggatgatgtggacatctttaaa--agaggaatttggaataagctatttctaaaaactttaaattgttagtataaagat 42224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 12256629 - 12256814
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  12256629 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 12256728  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  12256729 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 12256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 42842991 - 42843176
Alignment:
Q  1 atgtacaatttaatgattaata-aaaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | || | ||||||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  42842991 atgtacaatttaatgttaaaaagaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 42843090  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  42843091 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 42843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 39122473 - 39122595
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| |||||||||||||| |||||| ||||| ||    
T  39122473 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggagaaattttgggaacatatgccaag 39122572  T
Q  100 tagaattatgatgatgtggacat 122  Q
    |||  || |||||| ||||||||    
T  39122573 taggcttttgatgaggtggacat 39122595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 24775630 - 24775444
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||| ||    
T  24775630 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttgaaaaaaatgccaag 24775531  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  24775530 taggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 24775444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 43643147 - 43643332
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||||||||||||| | ||||| ||  ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  43643147 atgtacaatttaatgattaataaaaaacagtttttaattataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 43643246  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    | | ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  43643247 tgggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 43643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2023227 - 2023037
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattacta---agcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    |||||||||||||||||||||||||| | ||||| || |||||| ||||||| ||   |||||||||||||| |||||||||||||||||||||||||||    
T  2023227 atgtacaatttaatgattaataaaaaacagtttttaataataataataattattattaagcttgtattaaaaattaggagaaatttttggaacaaatgcc 2023128  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
     ||||| ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||||    
T  2023127 aagtaggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 2023037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 45537052 - 45536865
Alignment:
Q  1 atgtacaatttaatgattaataaaaa--cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgccta 98  Q
    ||||||||||||||||||||||||||  ||||||| || |||||| || |||| |||||||||||||||| ||||||||||||||||||||||||||| |    
T  45537052 atgtacaatttaatgattaataaaaaaacggtttttaataataataattattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaa 45536953  T
Q  99 gtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    |||| ||||||||||||||||||||||||||| | || | || |||||| ||||||||||||||||||||||||||||||||||||||    
T  45536952 gtaggattatgatgatgtggacatctttagaggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagata 45536865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 20274587 - 20274401
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||    
T  20274587 atgtacaatttaatgttaaataaaaaacggtttttaataataattataattattaagcttgtattaacaattaggagaaatttttggaacaaatgccaag 20274488  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| |||| |||||| ||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  20274487 taggattaggatgatatggacatctttagagtaaaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 20274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38984522 - 38984708
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||| |||||||||||||||||||| | ||||| || |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  38984522 atgtagaatttaatgattaataaaaaacagtttttaataataattataattattaagcttgtattaaaaattaggagaaatctttggaacaaatgccaag 38984621  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| ||||||||||||||||||||||||||| |||||| || | |||| ||| ||||||||||||||||||||||||||||||||||    
T  38984622 taggattatgatgatgtggacatctttagaggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagata 38984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 21332820 - 21333013
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattacta---agcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    |||||||||||||||||||||||||| | ||||| || |||||| ||||||| ||   |||||||||||||| |||||||||||||||||||||||||||    
T  21332820 atgtacaatttaatgattaataaaaaacagtttttaataataataataattattattaagcttgtattaaaaattaggagaaatttttggaacaaatgcc 21332919  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatatatt 189  Q
     ||||| ||||||||||||||||||||||||||| |||||| || |||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  21332920 aagtaggattatgatgatgtggacatctttagaggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagatttatt 21333013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 28645755 - 28645940
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||| ||||||||||||||||| | ||||| || |||||||||||||| |||| ||||||||||| |||||||||| ||||| |||||||||| ||    
T  28645755 atgtacaaattaatgattaataaaaaacagtttttaataataattataattattaagtttgtattaaaaattaggagaaacttttgtaacaaatgccaag 28645854  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  28645855 tatgattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 28645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 49005056 - 49004872
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||  |||||||| ||||||| || |||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| |     
T  49005056 atgtacaatttaatga--aataaaaaacggtttttaataataataataattattaagcttgtattaaaatt-aggagaaatttttggaacgaatgccaaa 49004960  T
Q  100 tagaattatgatgatgtggacatctttagagaagaggattg-ggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    ||  ||||||||||||||||| ||||||||| | ||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  49004959 tatgattatgatgatgtggacgtctttagaggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 49004872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 32523947 - 32524135
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||  || || || |||| ||||    ||||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  32523947 atgtacaatttaatgattaataaaaaacgtatttaataatatttatttataattattaagcttgtattaaaaattagaagaagtttttggaacaaatgcc 32524046  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     | ||| ||||||||||||||||||||||||||| |||||| ||   |||| |||||||||||||||||||||||||||||||||||||    
T  32524047 aattaggattatgatgatgtggacatctttagaggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagat 32524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18410405 - 18410217
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||  || || || |||| ||||    ||||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  18410405 atgtacaatttaatgattaataaaaaacgtatttaataatatttatttataattattaagcttgtattaaaaattagaagaagtttttggaacaaatgcc 18410306  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     | ||| ||||||||||||||||||||||||||| | |||| || | ||||  ||||||||||||||||||||||||||||||||||||    
T  18410305 aattaggattatgatgatgtggacatctttagaggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagat 18410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 42829888 - 42830017
Alignment:
Q  56 gcttgtattaaaatttaggagaaatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctattt 154  Q
    ||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||| | ||  ||||| |||||||    
T  42829888 gcttgtattaaaaattaggaggaatttttggaacaaatgccaagtaggattatgaagatgtggacatctttagaggagagaattttagaataggctattt 42829987  T
Q  155 ctaaaaactctaaattgttagtataaagat 184  Q
    ||||||||||||||||||||||||||||||    
T  42829988 ctaaaaactctaaattgttagtataaagat 42830017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2840528 - 2840351
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||| ||||||||| |||||||||| | ||||| || |||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||    
T  2840528 atgtagaatttaatggttaataaaaaacagtttttaataataattataattattaagcttgtattaaaaattaggagaaatatttggaacaaatgccaag 2840429  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||||||| ||||||        |||| |||||| || |||||| ||| |||||||||||||||||||||||||||||||||    
T  2840428 taggattatgataatgtgg--------agaggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 13496707 - 13496522
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  13496707 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 13496608  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| | ||||||||| |||||||||||||||||||||||||    
T  13496607 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 13496522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 24455282 - 24455469
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  24455282 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 24455381  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | ||||   ||||||||| |||||||||||||||||||||||||||    
T  24455382 taggtttttgatgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagatat 24455469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 42435836 - 42435651
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  42435836 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 42435737  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  42435736 taggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42435651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 32049929 - 32049742
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||  | |||||||| || ||||  | |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  32049929 atgtacaatttaatcttaaataaaaaacgatttttgataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 32049830  T
Q  100 tagaattatgatgatgtggacatctttaga-gaagaggattgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| ||||| |||  | |||   |||| ||||||||||| |||||||||||||||||||||||||||    
T  32049829 taggcttttgatgaggtggacatccttagaggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagatat 32049742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 22510458 - 22510273
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||| ||||||||||| ||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  22510458 atgtacaatttaataattaataaaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 22510359  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||||||||||| |||||||||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  22510358 taggattatgatgatgcggacatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 19420773 - 19420585
Alignment:
Q  1 atgtacaatttaatgattaataaaaa--cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgccta 98  Q
    ||||||||||||||||||||||||||  ||||||| || ||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||| | |    
T  19420773 atgtacaatttaatgattaataaaaaaacggtttttaataataattattattattaagcttgcattaaaaattaggagaaatttttggaacaaatgtcaa 19420674  T
Q  99 gtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||| |||||||||||  |||||||||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||    
T  19420673 gtaggattatgatgattaggacatctttagaggagaggattttggaataagctatttctaaaaactctaaattattagtataaagatat 19420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19420070 - 19420255
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | | ||||||  |||||| || |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||    
T  19420070 atgtacaatttaatgttaagtaaaaaatggtttttaataataattataattattaagcttgtattaataattaggagaaatttttggaacaaatgccaag 19420169  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  |||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  19420170 taagattaggatgatgtggacatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 19420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18903096 - 18903284
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||  || || || |||| ||||    ||||| ||| |||||||||||| |||| |||| |||||||||||||||||    
T  18903096 atgtacaatttaatgattaataaaaaacgtatttaataatatttatttataattattaaacttgtattaaaaattagaagaagtttttggaacaaatgcc 18903195  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  18903196 aattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4271589 - 4271776
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| ||| |||||||||||| ||||||| ||||||||||||| ||| | ||    
T  4271589 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaatcttgtattaaaaattaggaggaatttttggaacatatgtcaag 4271688  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||||    
T  4271689 taggtttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatat 4271776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 14175590 - 14175403
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| | ||||| || |||||||| ||||| ||||||||||||| || ||||||| |||||| |||||| ||||| ||    
T  14175590 atgtacaatttaatgttaaataaaaaacagtttttaataataattaaaattattaagcttgtattataaattaggaggaattttgggaacatatgccaag 14175491  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||||    
T  14175490 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 14175403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 14180126 - 14179939
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| | ||||| || |||||||| ||||| ||||||||||||| || ||||||| |||||| |||||| ||||| ||    
T  14180126 atgtacaatttaatgttaaataaaaaacagtttttaataataattaaaattattaagcttgtattataaattaggaggaattttgggaacatatgccaag 14180027  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||||    
T  14180026 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 14179939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 12501648 - 12501834
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  12501648 atgtacaatttaatgattaataaaaaaaggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaag 12501747  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||| ||||||||||||||||||| ||||||| |||||| || | |||| |||||||||||||||||||||||||||| |||||||||    
T  12501748 taggattatgatgatgtggacatttttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagata 12501834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9220205 - 9220023
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  |    
T  9220205 atgtacaatttaatgattaataaaaaatggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacg 9220106  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaa 181  Q
    ||| ||||||||||||||||||||||||||| |||| | || ||||||  |||||||||||||||||||||||||||||||||    
T  9220105 taggattatgatgatgtggacatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttagtataaa 9220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 39622078 - 39622263
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||| ||||||||||||||||| | ||||| || |||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||| ||    
T  39622078 atgtacaaattaatgattaataaaaaacagtttttaataataattataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaag 39622177  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||  |||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  39622178 tatgattatggtgatgtggacatctttagagaagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 16888758 - 16888937
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||| ||||||||| | ||||||| |||||||| || |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||| ||    
T  16888758 atgtataatttaatgttaaataaaaaacggtttttaataataattataattattaagcttgtattaacaattaggagaattttttggaacaaatgccaag 16888857  T
Q  100 tagaattatgatgatgtggacatctttagagaagaggattgggaataagctatttctaaaaactctaaattgttagtata 179  Q
    ||| |||| |||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||    
T  16888858 taggattaggatgatgtggacatctttagaggagaggttttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 6416763 - 6416574
Alignment:
Q  1 atgtacaatttaatgattaata-aaaacggttttaaacaa----taattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgc 95  Q
    |||||| ||||||||||||||| ||||||||||| || ||    || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  6416763 atgtaccatttaatgattaataaaaaacggtttttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgc 6416664  T
Q  96 ctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    | | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  6416663 caattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 6416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29089092 - 29089275
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagt 100  Q
    ||||||||||||||  |||| |||||||||||| || |||||||||||||| |||||||||||||| | |||||||||||||||||||||||| || |||    
T  29089092 atgtacaatttaatagttaa-aaaaacggtttttaataataattataattattaagcttgtattaacaattaggagaaatttttggaacaaattccaagt 29089190  T
Q  101 agaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    || |||| ||||||||| |||||||| ||| |||||| || |||||||  |||||||||||||||||||||||||||||||||||    
T  29089191 aggattaggatgatgtgaacatctttggaggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagat 29089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 18385576 - 18385764
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||   | || || |||| ||||    ||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  18385576 atgtacaatttaatgattaataaaaaacatatttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgcc 18385675  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||    
T  18385676 aattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 13279721 - 13279906
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||||  |||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  13279721 atgtacaatttaatgttaaataaaaaatggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 13279820  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| |||||||||||||||||||||||||||||||||||||    
T  13279821 taggcttttgatgaggtggacatccttagagcaaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 33441533 - 33441348
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| | ||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| |||||  |    
T  33441533 atgtacaatttaatgttaaataaaaaacagtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccatg 33441434  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||| | |||||| | |||| || | ||||||||||||||||||||||||||||||||||||||||||    
T  33441433 taggcttttgatgaggtggacacccttagaggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagat 33441348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 40557581 - 40557396
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  40557581 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 40557482  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  40557481 taggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 40557396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 36896535 - 36896719
Alignment:
Q  4 tacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtag 102  Q
    |||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| |||||    
T  36896535 tacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaagtag 36896634  T
Q  103 aattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
      || |||||| ||||||||| |||||| | ||| |||   ||||  ||||||||||||||||||||||||||||||||||||||    
T  36896635 gcttttgatgaggtggacatccttagaggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagatat 36896719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 16428332 - 16428144
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||  | |||||||| || ||||  | |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  16428332 atgtacaatttaattttaaataaaaaacgatttttgataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 16428233  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatata 187  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||||    
T  16428232 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatata 16428144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 22513998 - 22513813
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| | |||| ||||| ||    
T  22513998 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttagaaacatatgccaag 22513899  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||| | ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  22513898 taggcttttgataaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 22513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 31726283 - 31726196
Alignment:
Q  99 gtagaattatgatgatgtggacatctttagagaagaggattg-ggaataagctatttctaaaaa-ctctaaattgttagtataaagat 184  Q
    |||| |||| |||||||||||||||||||||  ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  31726283 gtaggattaggatgatgtggacatctttagacgagaggattttggaataagctatttctaaaaaactctaaattgttagtataaagat 31726196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 34802228 - 34802059
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||    
T  34802228 atgtacaatttaatgattaataaaaaacggtttttaataataattataattattaagcttgtattaaaatt-aggagaaatttttggaacaaatgccaag 34802130  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaat 169  Q
    ||| ||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||    
T  34802129 taggattatgatgatgtggacatctttagaggagaggattttggaataggctatttctaaaaactctaaat 34802059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 25887587 - 25887402
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| | ||||| || |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| | ||    
T  25887587 atgtacaatttaatgttaaataaaaaacagtttttaataataattataattattaagcttgtattaacaattaggagaaatttttggaacaaatgtcaag 25887488  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| |||| |||||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||    
T  25887487 taggattaggatgatgtggacatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 25887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 48426108 - 48425926
Alignment:
Q  4 tacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtag 102  Q
    |||||||||||||||||||||||  |||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||    
T  48426108 tacaatttaatgattaataaaaaatggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtag 48426009  T
Q  103 aattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     ||||| ||||||||||||||||||||| |||| | || | |||| ||||||||||||||||||||||||||| |||||||||    
T  48426008 gattattatgatgtggacatctttagaggagagaattttgaaataggctatttctaaaaactctaaattgttaatataaagat 48425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 5944045 - 5943852
Alignment:
Q  1 atgtacaatttaatgattaata-aaaacggttttaaacaa----taattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgc 95  Q
    |||||| ||||||||||||||| ||||||||||| || ||    || ||||||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  5944045 atgtaccatttaatgattaataaaaaacggtttttaataatatttatttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgc 5943946  T
Q  96 ctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagatatat 188  Q
    | | ||| ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||||||||||||||||||||||||    
T  5943945 caattaggattatgatgatgtggacatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatatat 5943852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 27024490 - 27024675
Alignment:
Q  1 atgtacaatttaatgattaat-aaaaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    |||||||||||||||| |||| |||||||||||| || |||||||||||||| |||||||||||| ||| || |||||| |||||||||||||||   ||    
T  27024490 atgtacaatttaatgactaataaaaaacggtttt-aataataattataattattaagcttgtattgaaaatttggagaattttttggaacaaatgataag 27024588  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagata 185  Q
    ||  ||||||||||||| ||||| |||| || |||||| ||  ||||| ||||||||||||||||||||||||||||||| ||||||    
T  27024589 tatgattatgatgatgtagacatatttaaaggagaggattttagaataggctatttctaaaaactctaaattgttagtatgaagata 27024675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 27071202 - 27071017
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  27071202 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaag 27071103  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  27071102 taggcttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 7509634 - 7509445
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  7509634 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 7509535  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagatatat 188  Q
    |||  || |||||| ||||||||| ||| || | ||| ||| | |||| | ||||||||| |||||||||||||||||||||||||||||    
T  7509534 taggcttttgatgaggtggacatccttaaaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatat 7509445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 27151284 - 27151103
Alignment:
Q  5 acaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtaga 103  Q
    ||||||||||| | |||||||| ||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| |||||     
T  27151284 acaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttaggaacatatgccaagtagg 27151185  T
Q  104 attatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     || |||||| ||||||||| |||||| | ||| ||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  27151184 cttttgatgaggtggacatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 36353196 - 36353359
Alignment:
Q  19 aataaaaacggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctagtagaattatgatgatgtgg 118  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | ||  |||||||| ||        
T  36353196 aataaaaacggtttttaataataattataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaaataagattatgataat---a 36353292  T
Q  119 acatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||||||||||  |||| | || | |||| ||||||| |||||||||||||||||||||||||||||    
T  36353293 acatctttagatgagagaattttgaaataggctatttttaaaaactctaaattgttagtataaagat 36353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 48945300 - 48945124
Alignment:
Q  1 atgtacaatttaatgattaataaaaac-ggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||||  |||||| || ||||| || ||||| |||| ||||||||||| ||||||| ||||||||||||||||||| |     
T  48945300 atgtacaatttaatgttaaataaaaaatggtttttaataataactacaattattaaggttgtattaaaaattaggaggaatttttggaacaaatgccaaa 48945201  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    ||| |||||||||||||||||||||||| || |||| | ||  |||||  |||||||||||||||||||||||||||    
T  48945200 taggattatgatgatgtggacatctttaaaggagagaattttagaatagactatttctaaaaactctaaattgttag 48945124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 9768566 - 9768751
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||||||| |||||| |||||| ||||| ||    
T  9768566 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaattattaagcttgtattaaaaattaggaggaattttgggaacatatgccaag 9768665  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | ||||   ||||||||| |||||||||||||||||||||||||    
T  9768666 taggtttttgatgaggtggacatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 9768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4943359 - 4943174
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | |||||||| ||||||| || |||||||| || || ||| |||||||||||| ||||||| || ||| |||||| ||||| ||    
T  4943359 atgtacaatttaatgttaaataaaaaacggtttttaataataattaaaactattaaacttgtattaaaaattaggaggaaatttaggaacatatgccaag 4943260  T
Q  100 tagaattatgatgatgtggacatctttagagaagagg-attgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    |||  || |||||| ||||||||| |||||| | ||| ||| | | || ||||||||||| |||||||||||||||||||||||||    
T  4943259 taggcttttgatgaggtggacatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 6243547 - 6243590
Alignment:
Q  143 aataagctatttctaaaaactctaaattgttagtataaagatat 186  Q
    |||| ||||||||||| |||||||||||||||||||||||||||    
T  6243547 aataggctatttctaagaactctaaattgttagtataaagatat 6243590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 9888 - 10073
Alignment:
Q  1 atgtacaatttaatgattaataaaa-acggttttaaacaataattataattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcctag 99  Q
    ||||||||||||||| | ||||||| |||||||| || ||||| |||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||    
T  9888 atgtacaatttaatgttaaataaaaaacggtttttaataataactataattattaagcttgtattaaaaattaggaggaatttttggaacaaatgccaag 9987  T
Q  100 tagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
    ||| ||||||| ||||||||||||||||||| |||| | ||  ||||| |||||||||||||||||||||||||||||||||||||    
T  9988 taggattatgaagatgtggacatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 10073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 241 - 350
Target Start/End: Original strand, 136039 - 136148
Alignment:
Q  241 tccagaaaatagtttgggtccatttattctctcacgaatctgtgattcctacattccggcgccgcaaacttcaactgcacaattcgccggcgacacattg 340  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  136039 tccagaaaatagtttgggtccatttcttctctcacgaatctgtgattcctacattccggcgccgcaaacatcaaccgaacaattcgccggcgacacattg 136138  T
Q  341 aagccttttg 350  Q
    ||||||||||    
T  136139 aagccttttg 136148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 198872 - 199060
Alignment:
Q  1 atgtacaatttaatgattaataaaaacggttttaaacaataattat----aattactaagcttgtattaaaatttaggagaaatttttggaacaaatgcc 96  Q
    ||||||||||||||||||||||||||  || || || |||| ||||    ||||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  198872 atgtacaatttaatgattaataaaaaacgtatttaataatatttatttataattattaagcttgtattaaaaattagaagaattttttggaacaaatgcc 198971  T
Q  97 tagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttagtataaagat 184  Q
     | ||| ||||||||||||||||||||||||||| |||||| ||   |||| |||||||||||||||||||||||||||||||||||||    
T  198972 aattaggattatgatgatgtggacatctttagaggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagat 199060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 69; Significance: 7e-31; HSPs: 5)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 10751 - 10643
Alignment:
Q  77 aaatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    |||||||||||||||||||| ||||| |||||| ||||||||||||||||| || |||||| || | |||| ||||||||||||||||||||||||||||    
T  10751 aaatttttggaacaaatgccaagtaggattatgctgatgtggacatctttaaaggagaggattttgaaataggctatttctaaaaactctaaattgttag 10652  T
Q  176 tataaagat 184  Q
    |||||||||    
T  10651 tataaagat 10643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 1316 - 1414
Alignment:
Q  78 aatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    ||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||| |||||| ||  ||||| |||||||||||||| ||| |||||||||    
T  1316 aattttttgaacaaatgccaagtaggattatgatgatgtagacatctttagaggagaggattttagaataggctatttctaaaaagtcttaattgttag 1414  T

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Target: scaffold0088; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 8706 - 8804
Alignment:
Q  78 aatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    ||||||| ||||||||| | ||||| ||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||||||| ||| |||||||||    
T  8706 aattttttgaacaaatgtcaagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 8804  T

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Target: scaffold0088; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 175
Target Start/End: Original strand, 25201 - 25299
Alignment:
Q  78 aatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    ||||||| ||||||||| | ||||| ||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||||||| ||| |||||||||    
T  25201 aattttttgaacaaatgtcaagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 25299  T

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Target: scaffold0088; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10974 - 10912
Alignment:
Q  1 atgtacaatttaatgattaataaaaa-cggttttaaacaataattataattactaagcttgta 62  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||    
T  10974 atgtacaatttaatgattaataaaaatcggtttttaataataattataattattaagcttgta 10912  T

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Target: scaffold1289 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 353 - 255
Alignment:
Q  78 aatttttggaacaaatgcctagtagaattatgatgatgtggacatctttagagaagagga-ttgggaataagctatttctaaaaactctaaattgttag 175  Q
    ||||||| ||||||||| | ||||| ||||||||||||| ||||||||||||| |||||| ||  |||||||||||||||||||| ||| |||||||||    
T  353 aattttttgaacaaatgtcaagtaggattatgatgatgtagacatctttagaggagaggattttagaataagctatttctaaaaagtcttaattgttag 255  T

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