View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8571_low_1 (Length: 595)
Name: NF8571_low_1
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Original strand, 11423929 - 11424496
Alignment:
| Q |
16 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11423929 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
11424028 |
T |
|
| Q |
116 |
cagagttagctgcttccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424029 |
cagagttagctgcttccaagaagccaatgccttctttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
11424128 |
T |
|
| Q |
216 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424129 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttg |
11424228 |
T |
|
| Q |
316 |
atgtcggaaatgggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatctgtttctgaaaggcctggaatca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11424229 |
atgtcggaaatgggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatcggtttctgaaaggcctggaatca |
11424328 |
T |
|
| Q |
416 |
agactatatatgaagatctttcttctatatagtttggtggct------------ttggaactttgacatgtggaatcaatgtctcattggtatcatccca |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424329 |
agactatatatgaagatctttcttctatatagtttgttggctccagctaactacttggaactttgacatgtggaatcaatgtctcattggtatcatccca |
11424428 |
T |
|
| Q |
504 |
tatttgtttagagcatggctttttaacatgtttgtattaaccaatttttgttaatgtaaagcagatac |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424429 |
tatttgtttagagcatggctttttaacatgtttgtattaaccaatttttgttaatgtaaagcagatac |
11424496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 32304624 - 32304268
Alignment:
| Q |
16 |
atgaatgcacgtgtcgctgattattgtcttcaccgacttatgactcaagctggtactattgagcagattcttgacgccggtgtcttaggttatcgcgcac |
115 |
Q |
| |
|
||||||||| |||| | ||||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||| || ||||||||||||||| || | |
|
|
| T |
32304624 |
atgaatgcatgtgttgttgattattgtcttcatcgacttatgactcaggcta-tactattgaacagattcttgatgcttgtgtcttaggttatcacgttc |
32304526 |
T |
|
| Q |
116 |
cagagttagctgcttccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctgg |
215 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||||||||||||||||| || |||||| ||||| ||||| |||||||||||||||||||||||| | |
|
|
| T |
32304525 |
cggagttaactgcttccaagaagacaatgccttccttcaagtcagatgtctttgttttcggtgtgatgctttttgaacttttaaccggaaggtgtgcttg |
32304426 |
T |
|
| Q |
216 |
tgatgtgataactggtgaggagggaggtgttgatcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttg |
315 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
32304425 |
tgatgtgataactagtgaggagggaggtgttgatcttgcagattggctaagactgtgagtagcagaaggtcgagtctcggaatgttttgatgcaactttg |
32304326 |
T |
|
| Q |
316 |
atgtcggaaatgggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatag |
373 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32304325 |
atgtcagaaatgggaaatctagttgtagaaaagggaatgaaggaggtcataggaatag |
32304268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 410
Target Start/End: Complemental strand, 9323177 - 9322798
Alignment:
| Q |
34 |
gattattgtcttcaccgacttatgactcaagctggtacta---ttgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctgctt |
130 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||| ||||| | ||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
9323177 |
gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagttagctgctt |
9323078 |
T |
|
| Q |
131 |
ccaagaagccaatgccttccttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctggtgatgtgataactgg |
230 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
9323077 |
caaagaagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtggtaactgg |
9322978 |
T |
|
| Q |
231 |
tgaggagggaggtg-ttgatcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttgatgtcggaaatggg |
329 |
Q |
| |
|
||||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
9322977 |
cgaggagggaggtgttttatcttacagattgg-ttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaaatggg |
9322879 |
T |
|
| Q |
330 |
aaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatctgtttctgaaaggcctgg |
410 |
Q |
| |
|
||||||||||||||| |||| || ||| |||||| ||||||||| |||||||||||| |||| |||||| |||||||||| |
|
|
| T |
9322878 |
aaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctgg |
9322798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 9330980 - 9330828
Alignment:
| Q |
240 |
aggtgttgatcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttgatgtcggaaatgggaaatccagtt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| || ||||||||||||| | || |
|
|
| T |
9330980 |
aggtgttgatcttacagattggctaagattgcgagtagcataaggtcgaggctccgaatgtttcgatgcagctttgacgttagaaatgggaaatctaatt |
9330881 |
T |
|
| Q |
340 |
gtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatc |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
9330880 |
gtagaaaagggaatgaatgaggtcctaggaatagcgattcgatatatttgatc |
9330828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 476 - 552
Target Start/End: Complemental strand, 9322758 - 9322682
Alignment:
| Q |
476 |
gaatcaatgtctcattggtatcatcccatatttgtttagagcatggctttttaacatgtttgtattaaccaattttt |
552 |
Q |
| |
|
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9322758 |
gaatcgatgtcttattggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaaccatttttt |
9322682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 11425636 - 11425708
Alignment:
| Q |
296 |
aatgtttcgatgcaactttgatgtcggaaatgggaaatccagttgtagaaaagggaatgaaggaggtcctagg |
368 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11425636 |
aatgttttgatgctactttgatgttagaaatggggaatccagttgtagaaaagggaatgaaggaggtcctagg |
11425708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 543
Target Start/End: Original strand, 11425713 - 11425856
Alignment:
| Q |
415 |
aagactatatatgaagatctttcttctatatagtttggtggct------------ttggaactttgacatgt----ggaatcaatgtctcattggtatca |
498 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
11425713 |
aagactatacatgaagatatttcttctatatagtttggtggctcatgctaactacttggaactt-gacatgtcatgggaatcaatgtctcattggtatca |
11425811 |
T |
|
| Q |
499 |
tcccatatttgtttagagcatggctttttaacatgtttgtattaa |
543 |
Q |
| |
|
|| | ||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
11425812 |
tctcgtatttgtttagggcatggctttttaagatgtctgtattaa |
11425856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Complemental strand, 9330791 - 9330754
Alignment:
| Q |
490 |
ttggtatcatcccatatttgtttagagcatggcttttt |
527 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
9330791 |
ttggtaccatcccatatttgtttagagcatgacttttt |
9330754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University