View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_10 (Length: 434)
Name: NF8571_low_10
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 24058673 - 24058257
Alignment:
| Q |
18 |
agacgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24058673 |
agacgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttctgagt |
24058574 |
T |
|
| Q |
118 |
cttcattacaacaacctatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattc |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058573 |
cttcattacaacaaccaatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattc |
24058474 |
T |
|
| Q |
218 |
aggatttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24058473 |
aggatttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcacagcatcaaaa |
24058374 |
T |
|
| Q |
318 |
ttctttgttgcttgtttgatctcatgcaaagtaaaatgcctcagaaatttgtaagcatttactgaatttttcttggatctgcaggattttaaataacgaa |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
24058373 |
ttctttgttgcttgttggatctcatgcaaagtaaaatgcctcagaaattcgtaagcatttactgaatttttcttggacctgcaggattttagataacgaa |
24058274 |
T |
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| Q |
418 |
atgatagtccaagaaat |
434 |
Q |
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||||||||||||||||| |
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| T |
24058273 |
atgatagtccaagaaat |
24058257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 14671346 - 14671689
Alignment:
| Q |
12 |
atcatcagacgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagtt |
111 |
Q |
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||||| || |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
14671346 |
atcattaggcgttgcttccaagatagaggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagtt |
14671445 |
T |
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| Q |
112 |
ccgagtcttcattacaacaacctatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtct |
211 |
Q |
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| |||||||| ||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
14671446 |
ctgagtcttcgttacaacaacctacaagtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtct |
14671545 |
T |
|
| Q |
212 |
agattcaggatttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgca |
311 |
Q |
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|||||||||||||||||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |
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| T |
14671546 |
agattcaggatttgctactttgatagctactacttctccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcg |
14671645 |
T |
|
| Q |
312 |
tcaaaattctttgttgcttgtttgatctcatgcaaagtaaaatg |
355 |
Q |
| |
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|||||| ||||||||||||| |||||| | ||||||||||| |
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| T |
14671646 |
tcaaaacaatttgttgcttgttgcatctcaagtaaagtaaaatg |
14671689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 14676733 - 14677067
Alignment:
| Q |
21 |
cgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtctt |
120 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
14676733 |
cgttgcttccaagatagaggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtctt |
14676832 |
T |
|
| Q |
121 |
cattacaacaacctatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcagg |
220 |
Q |
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| ||||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
14676833 |
cgttacaacaacctacaagtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttgtggaattcatcgagaccttgtctagattcagg |
14676932 |
T |
|
| Q |
221 |
atttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattc |
320 |
Q |
| |
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||||||||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||||| |||||| | |||| | || |||||| |
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| T |
14676933 |
atttgctactttgatagctactacttctccattttcaagcgttcctttatacacttttccaaatcctccttttccaattattagctcagcgtcaaaacaa |
14677032 |
T |
|
| Q |
321 |
tttgttgcttgtttgatctcatgcaaagtaaaatg |
355 |
Q |
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||||||||||||| |||||| | ||||||||||| |
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| T |
14677033 |
tttgttgcttgttgcatctcaagtaaagtaaaatg |
14677067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 14684968 - 14684690
Alignment:
| Q |
12 |
atcatcagacgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagtt |
111 |
Q |
| |
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||||| || |||||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
14684968 |
atcattaggcgttgcttccaagatagaggaacaaagtctctcccatatagataactgctgagagatccatttgccatgtaattgtacacaagaatcagtt |
14684869 |
T |
|
| Q |
112 |
ccgagtcttcattacaacaacctatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtct |
211 |
Q |
| |
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||||||||| ||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
14684868 |
ccgagtcttggttacaacaacctacaagagtgacaaggtttgaatgacgaagaccagacaaaaactcaatctcgttgtggaattcaccgagaccttgtct |
14684769 |
T |
|
| Q |
212 |
agattcaggatttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcct |
290 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||| |||||||| ||| || |||||||||| || |||||||||||| |
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| T |
14684768 |
agattcaggatttgctactttgatagctactacttttccattttcaagtgtttctttatacactttgccaaatcctcct |
14684690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 21 - 333
Target Start/End: Complemental strand, 30730465 - 30730153
Alignment:
| Q |
21 |
cgttgcttccaagacagtggaacaaagtctctcccatatagatgactactgagagatccatttgccatgtaattgtacactagaaccagttccgagtctt |
120 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
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| T |
30730465 |
cgttgcttccaagatagaggaacaaagtctctcccatatagatgactgctgagagatccatttgccatgtaattgtacacaagaatcagttctgagtctt |
30730366 |
T |
|
| Q |
121 |
cattacaacaacctatgagagagacaagatttgaatgacgaagaccagacaacaactcaatctcgttatggaattcaccgagaccttgtctagattcagg |
220 |
Q |
| |
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| ||| ||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30730365 |
cgttataacaacctacaagtgagacaaggtttgaatgactaagaccagacaacaactcaatctcgttttggaattcaccgagaccttgtctagattcagg |
30730266 |
T |
|
| Q |
221 |
atttgctactttgatggctactattttcccattttctagttttcctttatacacctttccaaatcctcctgctccaataagtagcactgcatcaaaattc |
320 |
Q |
| |
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||||||||||||||| ||||||| || |||||||| || ||||||| ||||| || ||||||||| || |||||| | |||| | || |||||| |
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| T |
30730265 |
atttgctactttgatagctactacttctccattttcaagcgttcctttgtacactttgccaaatccttcttttccaattattagctcagcgtcaaaacaa |
30730166 |
T |
|
| Q |
321 |
tttgttgcttgtt |
333 |
Q |
| |
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||||||||||||| |
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| T |
30730165 |
tttgttgcttgtt |
30730153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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