View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_12 (Length: 419)
Name: NF8571_low_12
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 17434092 - 17434492
Alignment:
| Q |
1 |
cctactacatttaccacaccccctaatttacttaaatttgtaaaacaacaatggaatcaaactcaacaaaattccaatcatcaacaataagtttagaaat |
100 |
Q |
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| T |
17434092 |
cctactacatttaccacaccccctaatttacttaaatttgtaaaacaacaatggaatcaaactcaacaaaattccaatcatcaacaataagtttagaaat |
17434191 |
T |
|
| Q |
101 |
ttcaaccggcgaagtttggctttgagttccttcaattgattattcatcttgatgaaatcaacttcaaggcttcttcgacaaatgtctgtaccaactgata |
200 |
Q |
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| T |
17434192 |
ttcaaccggcgaagttttgctttgagttccttcaattgattattcatcttgatgaaatcaacttcaaggcttcttcgacaaatgtctgtaccaactgata |
17434291 |
T |
|
| Q |
201 |
cattttgcacaaaaggtccttcaggaccatctgaactccatgctgccatttcttgattgatcaaaccctaaatnnnnnnnnnnnnnnnngatcaaatttc |
300 |
Q |
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| T |
17434292 |
cattttgcacaaaaggtccttcaggaccatctgaactccatgctgccatttcttgattgatcaaaccctaaataaaaaaataaaaaaaagatcaaatttc |
17434391 |
T |
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| Q |
301 |
aaggaaatgaaagctgtgtttgggaaatgggttttattttatgataagctatctgcaaagattctgtttgggaaagagagaaaagagattaatggattat |
400 |
Q |
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| T |
17434392 |
aaggaaatgaaagctgtgtttgggaaatgggttttattttatgataagctatctgcaaagattctgtttgggaaagagagaaaagagattaatggattat |
17434491 |
T |
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| Q |
401 |
g |
401 |
Q |
| |
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| T |
17434492 |
g |
17434492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 270
Target Start/End: Original strand, 17456353 - 17456486
Alignment:
| Q |
137 |
tgattattcatcttgatgaaatcaacttcaaggcttcttcgacaaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaac |
236 |
Q |
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| T |
17456353 |
tgatttttcatcttgatcagatcaacctcaaggcttctttcccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagc |
17456452 |
T |
|
| Q |
237 |
tccatgctgccatttcttgattgatcaaacccta |
270 |
Q |
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| T |
17456453 |
tccataccgccattttttaattgatcaaacccta |
17456486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 17463695 - 17463730
Alignment:
| Q |
216 |
gtccttcaggaccatctgaactccatgctgccattt |
251 |
Q |
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| T |
17463695 |
gtccttcaggaccatctgagctccatgctgccattt |
17463730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 774765 - 774730
Alignment:
| Q |
216 |
gtccttcaggaccatctgaactccatgctgccattt |
251 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
774765 |
gtccttcaggaccatctgagctccatgctgccattt |
774730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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