View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_13 (Length: 410)
Name: NF8571_low_13
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 15534478 - 15534857
Alignment:
| Q |
18 |
aattctgtatgcaaacaatgagtaaaaccctgtagagttgtcaaattagtccaggagtgcgttcnnnnnnn--ggtccgtagacaaagtggtaaaaacta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
15534478 |
aattctgtatgcaaacaatgagtaaaaccctgtagagttgtcaaattagtccaggagtacgttccttttttttggtccgtagacaaagtggtaaaaacta |
15534577 |
T |
|
| Q |
116 |
ctcaaactcacacacacctcgggttcaaatctggatgaagacgtctcactttaactcataaagatatgtaaaagtaaatgcttgannnnnnnnnnnnnac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
15534578 |
ctcaaactcacacacacctcgggttcaaatctggatgaagacgtctcactttaactcataaagatatgtaaaagaaaatgcttgattttttttttt--ac |
15534675 |
T |
|
| Q |
216 |
atattataaatgggttgcattatacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaa |
315 |
Q |
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| T |
15534676 |
atattataaatgggttgcattatacctcaaaccataataactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaa |
15534775 |
T |
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| Q |
316 |
ttttgcagccaagtgcaataaagtgtttcctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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| T |
15534776 |
ttttgcagccaagtgcaataaagtgtttcctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
15534857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 15625482 - 15625641
Alignment:
| Q |
238 |
tacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa |
337 |
Q |
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| T |
15625482 |
tacctcaaaccataataactcaaggcacatttgaaaagctgacccagaaaccaattcaagttgaacttgtggtgctaattttgcagccaagtgcaataaa |
15625581 |
T |
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| Q |
338 |
gtgtttcctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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| T |
15625582 |
gtgtttctgtcatcatcttcaaatgtcactatgataccctttatatgccctatttgatgt |
15625641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 231 - 397
Target Start/End: Original strand, 15517876 - 15518042
Alignment:
| Q |
231 |
tgcattatacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtg |
330 |
Q |
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|||| ||||||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
15517876 |
tgcactatacctcaaaccataataactcgacacacatttgaaaagctgcaccagaaaccaattcaagttgaccttgtggtgctaattttccagctaagtg |
15517975 |
T |
|
| Q |
331 |
caataaagtgtttcctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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| T |
15517976 |
caataaactgtttccttcatcgtcttcaaatgtcactatgatatcctttatatgccctatttgatgt |
15518042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 15655029 - 15655191
Alignment:
| Q |
238 |
tacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa |
337 |
Q |
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|||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15655029 |
tacctcaaaccatactaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgacttcgtggtgctaattttgcagccaagtgcaataaa |
15655128 |
T |
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| Q |
338 |
gtgtttc---ctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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||||||| | |||||||| ||||||| |||||||| |||| || ||||||||||||||| |
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| T |
15655129 |
gtgtttctgtcattatcatcttcatatgttactatgatacccttaatatgccctatttgatgt |
15655191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 15494096 - 15494255
Alignment:
| Q |
238 |
tacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa |
337 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |
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| T |
15494096 |
tacctcaaaccatactaactcgacacacatttgaaaagctgctccagaaaccaattcaagttgacctcgtcgtgctaattttgcagccaagtgtaatata |
15494195 |
T |
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| Q |
338 |
gtgtttcctttatcatcaacatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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||||||| | ||||| || ||||| |||||| ||||||||| ||||||||||||||| |
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| T |
15494196 |
gtgtttctgtcttcatcttcaaatgtcactatgacatcctttatatgccctatttgatgt |
15494255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 238 - 397
Target Start/End: Original strand, 15645877 - 15646039
Alignment:
| Q |
238 |
tacctcaaaccataacaactcaaggcacatttgaaaagctgctccagaaaccaattcaagttgacctcgtggtgctaattttgcagccaagtgcaataaa |
337 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15645877 |
tacctcaaaccatagtaactcgacgcacatttgaaaagcagctccagaaaccaattcaagttgatttcgtggtgctaattttgcagccaagtgcaatagt |
15645976 |
T |
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| Q |
338 |
gtgtttcctttatcatca---acatatgtcgctatgatatcctttatgtgccctatttgatgt |
397 |
Q |
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| T |
15645977 |
gtgtttctgtcatcatcattttcatatgtcactatgataccctttatatgccctatttgatgt |
15646039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 15605601 - 15605707
Alignment:
| Q |
294 |
caagttgacctcgtggtgctaattttgcagccaagtgcaataaagtgtttc---ctttatcatcaacatatgtcgctatgatatcctttatgtgccctat |
390 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||| | ||||||| ||||| || |
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| T |
15605601 |
caagttgaacttgtggtgctaattttgcagccaagtgcaataaagtgtttctgtcttcatcattttcatatgtcaatatgaaaccctttatatgccccat |
15605700 |
T |
|
| Q |
391 |
ttgatgt |
397 |
Q |
| |
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||||||| |
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| T |
15605701 |
ttgatgt |
15605707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 15534364 - 15534412
Alignment:
| Q |
18 |
aattctgtatgcaaacaatgagtaaaaccctgtagagttgtcaaattag |
66 |
Q |
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|||| |||||||| |||| || ||||||| ||||||||||||||||||| |
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| T |
15534364 |
aattgtgtatgcacacaaggaataaaaccttgtagagttgtcaaattag |
15534412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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