View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_14 (Length: 409)
Name: NF8571_low_14
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_14 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 56526129 - 56526531
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttttctcctcttttctcctctttttctacatctggttataacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526129 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttttctcctcttttctcctctttttctacatctggttataacgt |
56526228 |
T |
|
| Q |
101 |
attgtgactctagctaatggtgcccaaacccaatcccaagggattgaaacaacctgccccctctcttccctatcagttgattttgtcatttgtgtcgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526229 |
attgtgactctagctaatggtgcccaaacccaatcccaagggattgaaacaacctgccccctctcttccctatcagttgattttgtcatttgtgtcgcaa |
56526328 |
T |
|
| Q |
201 |
ggtgtccatttaatttaccatctataagtctgttaacctgttttcatgattgtttaattaccttcactaaagatattggtatcctgcaggatcacagttc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56526329 |
ggtgtccctttaatttaccatctataagtctgttaacctgttttcatgattgtttaattaccttcactaaagatattggtatcctgcaggatcacagttc |
56526428 |
T |
|
| Q |
301 |
gtgacagacgattggtgcgaaatgtgtctcatcgactctacaacctattgttaacatgttttcatgatcatttaattgccttcactgaagatgtccatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
56526429 |
gtgacagacgattggtgcgaaatgtgtctcatcgactctacaacctattgttaacatgttttcatgatcatttaattgccttcactgaagatgttcatat |
56526528 |
T |
|
| Q |
401 |
cat |
403 |
Q |
| |
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||| |
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|
| T |
56526529 |
cat |
56526531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27266698 - 27266756
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27266698 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
27266756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29635063 - 29635005
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29635063 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
29635005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 296600 - 296658
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
296600 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
296658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 20754110 - 20754052
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20754110 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
20754052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28275004 - 28275062
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275004 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
28275062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28353754 - 28353812
Alignment:
| Q |
1 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28353754 |
cttggaaaattaaaatactttctcggtatggagtttgcaagatcgaaagaaggaatttt |
28353812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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