View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_15 (Length: 398)
Name: NF8571_low_15
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 26686199 - 26686561
Alignment:
| Q |
29 |
ctccaacgactttctgaaggcgccatatttcatttgttagtgtcttcttcctctatataatggtgattcagcgtaacccattcattttccacatttttat |
128 |
Q |
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| T |
26686199 |
ctccaacgactttctgaaggcgtcatatttcatctgttagtgtcttcttcctctatataagggtgattcagcgtaacccattcattttccacatttttat |
26686298 |
T |
|
| Q |
129 |
acattcaatctcatttcttacaccgcgaagacgtcatcgccaccgcatcggagcactgcaccgttaccgttgcctccacccgttcccaccggacagatca |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
26686299 |
acattcaatctcatttcttacaccgcgaagacgtcatcgccaccgcatcggagcactgcaccgttaccgttgcctccacccgtccccactggacagatca |
26686398 |
T |
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| Q |
229 |
ctagctatattaacgagagaaaaaattagttcactgaatgtggcacaagccaaatgaaaactactcaaaaccttcaccacaagaagttctattaaaattg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26686399 |
ctagctatattaacgagagaaaaaattagttcactgaatgtggcacaagccaaatgaaaactactcaaaaccttcaccacaagaagttctattaaaattg |
26686498 |
T |
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| Q |
329 |
actaattagacttaaaagtgacatttttaatataagatctttcatatacattggtctatgata |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26686499 |
actaattagacttaaaagtgacatttttaatataagatctttcatatacattggtctatgata |
26686561 |
T |
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