View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_18 (Length: 370)
Name: NF8571_low_18
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 199 - 365
Target Start/End: Original strand, 29589892 - 29590056
Alignment:
| Q |
199 |
tagaaatatacatatataaataaagaaacgataataatttgtgtggaaatcagttgtatccgtaaataacataatctgtatattttatatttattgattc |
298 |
Q |
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| T |
29589892 |
tagaaatatacatat--aaataaagaaacgataataatttctgtggaaatcagttgtatccgtaaataacataatatgtacattttatatttattgattc |
29589989 |
T |
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| Q |
299 |
cgttattttctatatagtaaatgatgcacatgcatatattattccattctcttggttctctgctact |
365 |
Q |
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| T |
29589990 |
cgttattttctatatagtaaatgatgcacatgcatatattattccattctcttggttttctgctact |
29590056 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 29589710 - 29589780
Alignment:
| Q |
25 |
agtatattcttacactcacttgtaactaaaaatta-cctgtcactcatttactctcttttcattgactaac |
94 |
Q |
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| T |
29589710 |
agtatattcttacactcacttgtaactaaaaattatattgtcactcatttactctcttttcattgactaac |
29589780 |
T |
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