View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_low_2 (Length: 588)

Name: NF8571_low_2
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_low_2
NF8571_low_2
[»] chr7 (5 HSPs)
chr7 (1-462)||(4561253-4561725)
chr7 (502-578)||(4561772-4561848)
chr7 (3-47)||(1101273-1101317)
chr7 (3-58)||(42648062-42648117)
chr7 (511-579)||(1101734-1101801)
[»] chr2 (5 HSPs)
chr2 (1-462)||(14953395-14953867)
chr2 (502-578)||(14953277-14953353)
chr2 (512-579)||(40833270-40833336)
chr2 (3-58)||(5709248-5709303)
chr2 (506-579)||(14002214-14002287)
[»] chr8 (2 HSPs)
chr8 (1-462)||(5370525-5370997)
chr8 (502-578)||(5370406-5370482)
[»] chr3 (2 HSPs)
chr3 (508-579)||(46697191-46697262)
chr3 (320-357)||(46697010-46697047)
[»] chr6 (1 HSPs)
chr6 (514-579)||(23885849-23885914)
[»] chr4 (2 HSPs)
chr4 (511-579)||(56398469-56398536)
chr4 (3-56)||(16834023-16834076)
[»] chr1 (1 HSPs)
chr1 (506-579)||(6284577-6284650)
[»] chr5 (1 HSPs)
chr5 (539-571)||(37606037-37606069)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 4561253 - 4561725
Alignment:
Q  1 atacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttgtcattt 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561253 atacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttgtcattt 4561352  T
Q  101 tcccttttctttctcactccatgtccgtttccctct-----------tctttctctctcgtcctttgactttggtggtgacagtagaagtggttggattt 189  Q
    ||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4561353 tccctttcctttctcactccatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggttggattt 4561452  T
Q  190 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagttgcagg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4561453 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcggtgatctgaatctgagagttgcagg 4561552  T
Q  290 tcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagac 389  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4561553 tcgtttgcagaagtggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagac 4561652  T
Q  390 ggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561653 ggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 4561725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 502 - 578
Target Start/End: Original strand, 4561772 - 4561848
Alignment:
Q  502 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4561772 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 4561848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 1101273 - 1101317
Alignment:
Q  3 acacaaatacgacagcaatggcaatttcgtaattctaattaaagt 47  Q
    ||||||||||||||||||||||||||| |||||| | ||||||||    
T  1101273 acacaaatacgacagcaatggcaattttgtaattatcattaaagt 1101317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 42648117 - 42648062
Alignment:
Q  3 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaa 58  Q
    |||||||||||||| |||||||| ||| |||||||||||| ||||  |||||||||    
T  42648117 acacaaatacgacatcaatggcatttttgtaattctaattgaagtgcaaggacaaa 42648062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 579
Target Start/End: Original strand, 1101734 - 1101801
Alignment:
Q  511 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||| |||||| |||||| |||||| |||||||||| || ||||  |||||||||||||||||| ||||    
T  1101734 tgtacaaatactgtataa-tatacgatgaacagtgtatgatgtctaatttgtgtttgtattttggtgtc 1101801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 14953867 - 14953395
Alignment:
Q  1 atacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttgtcattt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14953867 atacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaacgaagtggcaattttgtcattt 14953768  T
Q  101 tcccttttctttctcactccatgtccgtttccctcttct-----------ttctctctcgtcctttgactttggtggtgacagtagaagtggttggattt 189  Q
    ||||||| |||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14953767 tccctttcctttctcacttcatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggttggattt 14953668  T
Q  190 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagttgcagg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  14953667 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcagtgatcggaatctgagagttgcagg 14953568  T
Q  290 tcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagac 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14953567 tcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagac 14953468  T
Q  390 ggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14953467 ggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 14953395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 502 - 578
Target Start/End: Complemental strand, 14953353 - 14953277
Alignment:
Q  502 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 578  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14953353 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 14953277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 512 - 579
Target Start/End: Original strand, 40833270 - 40833336
Alignment:
Q  512 gtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||||||||||||||||| ||||||| |||| | |||||||||| |||||| |||||| |||||||||    
T  40833270 gtataaataccgtataaacatacggtcaacaatatttggtgtcaaatttgt-tttgtaatttgatgtc 40833336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 5709248 - 5709303
Alignment:
Q  3 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaa 58  Q
    |||||||||||||| || ||||| |||||||||||||||| ||||  |||||||||    
T  5709248 acacaaatacgacatcagtggcattttcgtaattctaattgaagtgcaaggacaaa 5709303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 579
Target Start/End: Original strand, 14002214 - 14002287
Alignment:
Q  506 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||| ||||| |||||||||||||||||  | ||||  |||||| ||||  |||||| ||||||||||||||||    
T  14002214 actggtgtatcaataccgtataaatatattgcgaactttgtttgatgtctaatttgtatttgtattttgatgtc 14002287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 5370997 - 5370525
Alignment:
Q  1 atacacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaatgaagtggcaattttgtcattt 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5370997 atacacaaatacgacagcagtggcaatttcgtaattctaattaaagtataaggacaaaattgggttttcaacagaaaaagaagtggcaattttgtcattt 5370898  T
Q  101 tcccttttctttctcactccatgtccgtttccctcttct-----------ttctctctcgtcctttgactttggtggtgacagtagaagtggttggattt 189  Q
    ||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5370897 tccctttcctttctcactccatgtccgtttccctcttctctcactcttctttctctctcgtcctttgactttggtggtgacagcagaagtggttggattt 5370798  T
Q  190 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagttggtgatcggaatctgagagttgcagg 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||    
T  5370797 gtaggaggtggagacatatttgaattgatcggatctgaagaggaaagcagaaaatgttccggtgtttgtcagtcagtgatcagaatctgagagttgcagg 5370698  T
Q  290 tcgtttgcagaagcggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagttgtaggtgagagcttagac 389  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5370697 tcgtttgcagaagaggaaagaaggacaaacttgttggtggtggtcagatctaagctgatcggagaagaatgagaaagcagtggtaggtgagagcttagac 5370598  T
Q  390 ggcggtggttgtagagagacggcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 462  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370597 ggcggtggttgtagagagacagcggtgagagagacagtgggtgccgggaggtggtgagagaatgtcacgtaag 5370525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 502 - 578
Target Start/End: Complemental strand, 5370482 - 5370406
Alignment:
Q  502 gaacactgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgt 578  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5370482 gaacactgatatataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgt 5370406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 508 - 579
Target Start/End: Original strand, 46697191 - 46697262
Alignment:
Q  508 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46697191 tgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcaaatttgtgtttgtattttgatgtc 46697262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 46697010 - 46697047
Alignment:
Q  320 ttgttggtggtggtcagatctaagctgatcggagaaga 357  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46697010 ttgttggtggtggtcagatctgagctgatcggagaaga 46697047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 514 - 579
Target Start/End: Complemental strand, 23885914 - 23885849
Alignment:
Q  514 ataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||||||| |||||||||||| || ||||||||||| ||||  |||||||||||||||||||||||    
T  23885914 ataaatactgtataaatatactgtaaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 23885849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 579
Target Start/End: Original strand, 56398469 - 56398536
Alignment:
Q  511 tgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||| |||||| |||||| |||||| ||||||||||||| ||||  |||||||||||||||||||||||    
T  56398469 tgtacaaatactgtataa-tatacgatgaacagtgtttgatgtctaatttgtgtttgtattttgatgtc 56398536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 16834023 - 16834076
Alignment:
Q  3 acacaaatacgacagcaatggcaatttcgtaattctaattaaagtataaggaca 56  Q
    |||||||||||||| || ||||| |||||||||||||||| ||||  |||||||    
T  16834023 acacaaatacgacatcagtggcattttcgtaattctaattgaagtgcaaggaca 16834076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 579
Target Start/End: Complemental strand, 6284650 - 6284577
Alignment:
Q  506 actgatgtataaataccgtataaatatacggtgaacagtgtttggtgtcatatttgtgtttgtattttgatgtc 579  Q
    |||||| ||| ||||||||||||| ||||  |||| | |||||| ||||  |||||||||||||||||||||||    
T  6284650 actgatatatgaataccgtataaagatactatgaataatgtttgatgtctaatttgtgtttgtattttgatgtc 6284577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 539 - 571
Target Start/End: Original strand, 37606037 - 37606069
Alignment:
Q  539 aacagtgtttggtgtcatatttgtgtttgtatt 571  Q
    |||||||| ||||||||||||||||||||||||    
T  37606037 aacagtgtatggtgtcatatttgtgtttgtatt 37606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University