View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_low_20 (Length: 327)

Name: NF8571_low_20
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_low_20
NF8571_low_20
[»] chr5 (13 HSPs)
chr5 (106-312)||(3714717-3714924)
chr5 (1-68)||(25175118-25175185)
chr5 (31-68)||(18433313-18433350)
chr5 (33-68)||(25116060-25116095)
chr5 (35-68)||(41382912-41382945)
chr5 (34-68)||(18433035-18433069)
chr5 (34-68)||(22428953-22428987)
chr5 (34-68)||(22429196-22429230)
chr5 (35-65)||(23011383-23011413)
chr5 (34-68)||(26020470-26020504)
chr5 (32-65)||(5187828-5187861)
chr5 (31-68)||(33324835-33324872)
chr5 (36-68)||(31569926-31569958)
[»] scaffold0802 (2 HSPs)
scaffold0802 (1-68)||(1138-1205)
scaffold0802 (31-68)||(1417-1454)
[»] chr8 (23 HSPs)
chr8 (1-68)||(15155903-15155970)
chr8 (31-68)||(9465871-9465908)
chr8 (31-68)||(18020085-18020122)
chr8 (31-68)||(34313783-34313820)
chr8 (31-68)||(37752413-37752450)
chr8 (31-65)||(12281423-12281457)
chr8 (31-65)||(41662130-41662164)
chr8 (31-68)||(15156182-15156219)
chr8 (31-68)||(16928962-16928999)
chr8 (31-68)||(16929239-16929276)
chr8 (31-68)||(43245891-43245928)
chr8 (31-66)||(74981-75016)
chr8 (34-68)||(3463660-3463694)
chr8 (34-68)||(22851410-22851444)
chr8 (31-65)||(23123514-23123548)
chr8 (31-68)||(765754-765791)
chr8 (32-65)||(9930837-9930870)
chr8 (31-68)||(41662400-41662437)
chr8 (31-68)||(43162253-43162290)
chr8 (31-68)||(43162536-43162573)
chr8 (31-68)||(43246173-43246210)
chr8 (35-68)||(43598756-43598789)
chr8 (32-68)||(7127672-7127708)
[»] chr6 (14 HSPs)
chr6 (1-68)||(18241874-18241941)
chr6 (31-68)||(3403986-3404023)
chr6 (31-68)||(12714451-12714488)
chr6 (31-68)||(33972013-33972050)
chr6 (31-67)||(11656779-11656815)
chr6 (32-68)||(30388360-30388396)
chr6 (34-68)||(3403737-3403771)
chr6 (34-68)||(10039695-10039729)
chr6 (38-68)||(31598732-31598762)
chr6 (31-68)||(3825546-3825583)
chr6 (31-68)||(13579648-13579685)
chr6 (31-68)||(18242153-18242190)
chr6 (31-68)||(21031998-21032035)
chr6 (39-68)||(21032285-21032314)
[»] chr4 (15 HSPs)
chr4 (1-68)||(13198873-13198940)
chr4 (31-65)||(16555538-16555572)
chr4 (31-68)||(3930477-3930514)
chr4 (31-68)||(22681594-22681631)
chr4 (1-68)||(3930198-3930265)
chr4 (34-65)||(8488211-8488242)
chr4 (120-191)||(41754530-41754600)
chr4 (31-65)||(11241412-11241446)
chr4 (31-68)||(7603163-7603200)
chr4 (31-68)||(18077199-18077236)
chr4 (34-67)||(24775783-24775816)
chr4 (31-68)||(27304736-27304773)
chr4 (31-68)||(35393773-35393810)
chr4 (35-68)||(39415244-39415277)
chr4 (31-68)||(49178813-49178850)
[»] chr3 (11 HSPs)
chr3 (1-68)||(10293876-10293943)
chr3 (1-68)||(20968738-20968805)
chr3 (31-68)||(10293628-10293665)
chr3 (33-68)||(47871121-47871156)
chr3 (35-68)||(4947279-4947312)
chr3 (34-67)||(9026756-9026789)
chr3 (34-67)||(14015964-14015997)
chr3 (37-66)||(17441066-17441095)
chr3 (35-68)||(18874902-18874935)
chr3 (31-68)||(18875188-18875225)
chr3 (32-68)||(17372318-17372354)
[»] chr7 (13 HSPs)
chr7 (31-68)||(3687374-3687411)
chr7 (34-68)||(5349733-5349767)
chr7 (31-65)||(9412046-9412080)
chr7 (31-68)||(8953886-8953923)
chr7 (34-65)||(35080223-35080254)
chr7 (32-62)||(5349489-5349519)
chr7 (31-68)||(3687653-3687690)
chr7 (35-68)||(6908232-6908265)
chr7 (31-68)||(9412322-9412359)
chr7 (31-68)||(13772898-13772935)
chr7 (31-68)||(29291826-29291863)
chr7 (33-66)||(34235977-34236010)
chr7 (35-68)||(38191566-38191599)
[»] chr1 (10 HSPs)
chr1 (1-65)||(17518325-17518389)
chr1 (32-68)||(8108741-8108777)
chr1 (1-68)||(47955575-47955642)
chr1 (31-68)||(13589656-13589693)
chr1 (31-68)||(31848189-31848226)
chr1 (31-68)||(41083208-41083245)
chr1 (31-68)||(1176856-1176893)
chr1 (31-68)||(17518599-17518636)
chr1 (31-68)||(47955326-47955363)
chr1 (36-68)||(22149701-22149733)
[»] scaffold0110 (2 HSPs)
scaffold0110 (1-68)||(45556-45623)
scaffold0110 (31-68)||(45804-45841)
[»] chr2 (17 HSPs)
chr2 (31-67)||(15920799-15920835)
chr2 (1-68)||(30191192-30191259)
chr2 (1-67)||(40469448-40469514)
chr2 (31-68)||(11883643-11883680)
chr2 (31-68)||(11883923-11883960)
chr2 (1-65)||(32672865-32672929)
chr2 (31-68)||(40469726-40469763)
chr2 (36-68)||(6171175-6171207)
chr2 (34-66)||(20347185-20347217)
chr2 (31-67)||(26737501-26737537)
chr2 (34-68)||(24832351-24832385)
chr2 (34-67)||(7591850-7591883)
chr2 (31-68)||(20347461-20347498)
chr2 (31-68)||(30190943-30190980)
chr2 (36-68)||(6495723-6495755)
chr2 (32-68)||(15321410-15321446)
chr2 (32-68)||(32673141-32673177)
[»] scaffold0319 (2 HSPs)
scaffold0319 (31-68)||(6414-6451)
scaffold0319 (31-68)||(6694-6731)
[»] scaffold0192 (1 HSPs)
scaffold0192 (31-68)||(25366-25403)
[»] scaffold0009 (1 HSPs)
scaffold0009 (31-68)||(205706-205743)
[»] scaffold0002 (1 HSPs)
scaffold0002 (31-68)||(411942-411979)
[»] scaffold0001 (1 HSPs)
scaffold0001 (31-68)||(438950-438987)
[»] scaffold1221 (1 HSPs)
scaffold1221 (31-68)||(1781-1818)
[»] scaffold0376 (1 HSPs)
scaffold0376 (31-68)||(7597-7634)
[»] scaffold0015 (1 HSPs)
scaffold0015 (31-68)||(16871-16908)
[»] scaffold0598 (1 HSPs)
scaffold0598 (36-68)||(6627-6659)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 106 - 312
Target Start/End: Complemental strand, 3714924 - 3714717
Alignment:
Q  106 gataaagtgataacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacaccttt-ggagaacttatttcccacattcactagcag 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3714924 gataaagtgacaacaagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacaccttttggagaacttatttcccacattcactagcag 3714825  T
Q  205 tcataatgaatgtatactgtttgatccgatctcgttggtttgtctgataaattctttgtagtctgtactgtagtactcattcaagaaccatactctcaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3714824 tcataatgaatgtatactgtttgatccgatctcgttggtttgtctgataaattctttgtagtctgtactgtagtactcattcaagaaccatactctcaat 3714725  T
Q  305 gttatgtt 312  Q
    ||||||||    
T  3714724 gttatgtt 3714717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25175118 - 25175185
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  25175118 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 25175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18433313 - 18433350
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18433313 gagggggtgcaaaatcgcacaattaacaaaagataggg 18433350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 25116060 - 25116095
Alignment:
Q  33 gggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||    
T  25116060 gggggtgcaaaatcgcacaattaacaaaagataggg 25116095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 41382945 - 41382912
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||    
T  41382945 gggtgcaaaatcgcacaattaacaaaagataggg 41382912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18433069 - 18433035
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  18433069 ggggtgcaaaatcgcacaattagcaaaagataggg 18433035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 22428987 - 22428953
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  22428987 ggggtgcaaaatcgcacaattagcaaaagataggg 22428953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 22429196 - 22429230
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  22429196 ggggtgcaaaatcgcacaattagcaaaagataggg 22429230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 23011383 - 23011413
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||||||||||||    
T  23011383 gggtgcaaaatcgcacaattaacaaaagata 23011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 26020504 - 26020470
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  26020504 ggggtgcaaaatcgcacaattagcaaaagataggg 26020470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 5187828 - 5187861
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||| |||||||||||||||||||    
T  5187828 agggggtgcaaaattgcacaattaacaaaagata 5187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 33324835 - 33324872
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  33324835 gagggggtgcaaaatcacacaattgacaaaagataggg 33324872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 31569958 - 31569926
Alignment:
Q  36 ggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||| |||||||||||||    
T  31569958 ggtgcaaaatcgcacaattgacaaaagataggg 31569926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1205 - 1138
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  1205 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 1417 - 1454
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  1417 gagggggtgcaaaatcgcacaattggcaaaagataggg 1454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15155970 - 15155903
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  15155970 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 15155903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 9465871 - 9465908
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9465871 gagggggtgcaaaatcgcacaattaacaaaagataggg 9465908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18020085 - 18020122
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18020085 gagggggtgcaaaatcgcacaattaacaaaagataggg 18020122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 34313820 - 34313783
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34313820 gagggggtgcaaaatcgcacaattaacaaaagataggg 34313783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 37752413 - 37752450
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37752413 gagggggtgcaaaatcgcacaattaacaaaagataggg 37752450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 12281423 - 12281457
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||||||||||||||||    
T  12281423 gagggggtgcaaaatcgcacaattaacaaaagata 12281457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 41662164 - 41662130
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||||||||||||||||    
T  41662164 gagggggtgcaaaatcgcacaattaacaaaagata 41662130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 15156182 - 15156219
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15156182 gagggggtgcaaaatcgcacaattgacaaaagataggg 15156219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 16928999 - 16928962
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16928999 gagggggtgcaaaatcgcacaattagcaaaagataggg 16928962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 16929239 - 16929276
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  16929239 gagggggtgcaaaatcgcacaattagcaaaagataggg 16929276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 43245928 - 43245891
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  43245928 gagggggtgcaaaatcgcacaattatcaaaagataggg 43245891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 74981 - 75016
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagatag 66  Q
    ||||||||||||||||||||||||| ||||||||||    
T  74981 gagggggtgcaaaatcgcacaattagcaaaagatag 75016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 3463694 - 3463660
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||| ||||||||||||||||||||||    
T  3463694 ggggtgcaaaattgcacaattaacaaaagataggg 3463660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 22851444 - 22851410
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||| |||||||||||||    
T  22851444 ggggtgcaaaatcgcacaattgacaaaagataggg 22851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 23123514 - 23123548
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    ||||||||||||||||||||||||| |||||||||    
T  23123514 gagggggtgcaaaatcgcacaattagcaaaagata 23123548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 765791 - 765754
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  765791 gagggggtgcaaaatcgcacaattggcaaaagataggg 765754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 9930837 - 9930870
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||| |||||||||||||||||||||||||||||    
T  9930837 agggagtgcaaaatcgcacaattaacaaaagata 9930870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 41662400 - 41662437
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  41662400 gagggggtgcaaaatcgcacaattggcaaaagataggg 41662437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 43162290 - 43162253
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  43162290 gaggaggtgcaaaatcgcacaattaacaaaatataggg 43162253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 43162536 - 43162573
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  43162536 gagggggtgcaaaatcgcacgattgacaaaagataggg 43162573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 43246173 - 43246210
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  43246173 gagggggtgcaaaatcacacaattagcaaaagataggg 43246210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 43598756 - 43598789
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  43598756 gggtgcaaaatcgcacaattagcaaaagataggg 43598789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 7127708 - 7127672
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  7127708 aggggatgcaaaatcgcacaattagcaaaagataggg 7127672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18241941 - 18241874
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  18241941 agatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 18241874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 3403986 - 3404023
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  3403986 gagggggtgcaaaatcgcacaattagcaaaagataggg 3404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 12714488 - 12714451
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||| |||||||||||||||||||||||||||||||    
T  12714488 gaggggctgcaaaatcgcacaattaacaaaagataggg 12714451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 33972050 - 33972013
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33972050 gagggggtgcaaaatcgtacaattaacaaaagataggg 33972013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 11656779 - 11656815
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    ||||||||||||||||||||||||| |||||||||||    
T  11656779 gagggggtgcaaaatcgcacaattagcaaaagatagg 11656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 30388360 - 30388396
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30388360 agggggtgcaaaatcgcacaattagcaaaagataggg 30388396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 3403771 - 3403737
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  3403771 ggggtgcaaaatcgcacaattagcaaaagataggg 3403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 10039729 - 10039695
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  10039729 ggggtgcaaaatcgcacaattagcaaaagataggg 10039695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 68
Target Start/End: Original strand, 31598732 - 31598762
Alignment:
Q  38 tgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||||||||||    
T  31598732 tgcaaaatcgcacaattaacaaaagataggg 31598762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 3825583 - 3825546
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  3825583 gagggggtgcaaaatcgcacaattagcaaaatataggg 3825546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13579648 - 13579685
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13579648 gagggggtgcaaaatcgcacaattagcaaacgataggg 13579685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18242153 - 18242190
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  18242153 gagggggtgcaaaatcgcacaattggcaaaagataggg 18242190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 21032035 - 21031998
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  21032035 gagggggtgcaaaatcgcacaattagcaaaagttaggg 21031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 21032285 - 21032314
Alignment:
Q  39 gcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||    
T  21032285 gcaaaatcgcacaattaacaaaagataggg 21032314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13198873 - 13198940
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  13198873 agatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 13198940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 16555572 - 16555538
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||||||||||||||||    
T  16555572 gagggggtgcaaaatcgcacaattaacaaaagata 16555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 3930477 - 3930514
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  3930477 gagggggtgcaaaatcgcacaattagcaaaagataggg 3930514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 22681631 - 22681594
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22681631 gagggggtgcaaaatcgcacaattgacaaaagataggg 22681594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3930265 - 3930198
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||| |||||| |||||||||||    
T  3930265 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcataattaataaaagataggg 3930198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 8488242 - 8488211
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagata 65  Q
    ||||||||||||||||||||||||||||||||    
T  8488242 ggggtgcaaaatcgcacaattaacaaaagata 8488211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 41754530 - 41754600
Alignment:
Q  120 aagaaggacgaagatgggtttctgtatgttacatacagcggacgaaaacacctttggagaacttatttccca 191  Q
    |||||||| |||||||||||||| |||||||| ||||| ||  || |||||||||||||| || ||||||||    
T  41754530 aagaaggatgaagatgggtttctttatgttacttacagtgg-ggagaacacctttggagatctgatttccca 41754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 11241446 - 11241412
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||| ||||||||||||||||||||||||||||    
T  11241446 gaggggatgcaaaatcgcacaattaacaaaagata 11241412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 7603200 - 7603163
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  7603200 gagggggtgcaaaattgcacaattaaaaaaagataggg 7603163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18077199 - 18077236
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  18077199 gagggggtgcaaaatcgcacaattagcaaaaaataggg 18077236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 24775783 - 24775816
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    ||||||||||||||||||||| ||||||||||||    
T  24775783 ggggtgcaaaatcgcacaattgacaaaagatagg 24775816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 27304773 - 27304736
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| || |||||||||    
T  27304773 gagggggtgcaaaatcgcacaattagcagaagataggg 27304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 35393773 - 35393810
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  35393773 gagggggtgcaaattcgcacaattagcaaaagataggg 35393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 39415277 - 39415244
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  39415277 gggtgcaaaatcgcacaattagcaaaagataggg 39415244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 49178813 - 49178850
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  49178813 gagggggtgcaaaatcgcacaattggcaaaagataggg 49178850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10293876 - 10293943
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  10293876 agatagggtgcaaaatcgctcaaaacaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 10293943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20968805 - 20968738
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  20968805 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagataggg 20968738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10293665 - 10293628
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| |||||||||||||    
T  10293665 gagggggtgcaaaatcgcacaattgacaaaagataggg 10293628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 47871121 - 47871156
Alignment:
Q  33 gggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||| ||||||||||||    
T  47871121 gggggtgcaaaatcgcacaattagcaaaagataggg 47871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 4947312 - 4947279
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||| ||||||    
T  4947312 gggtgcaaaatcgcacaattaacaaaaaataggg 4947279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 9026789 - 9026756
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    |||||||||||| |||||||||||||||||||||    
T  9026789 ggggtgcaaaattgcacaattaacaaaagatagg 9026756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 14015964 - 14015997
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    |||||||||||||||||||||| |||||||||||    
T  14015964 ggggtgcaaaatcgcacaattagcaaaagatagg 14015997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 17441066 - 17441095
Alignment:
Q  37 gtgcaaaatcgcacaattaacaaaagatag 66  Q
    ||||||||||||||||||||||||||||||    
T  17441066 gtgcaaaatcgcacaattaacaaaagatag 17441095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 18874935 - 18874902
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||| ||||||||||||    
T  18874935 gggtgcaaaatcgcacaattagcaaaagataggg 18874902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 18875188 - 18875225
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  18875188 gagggggtgcaaaatcgtacaattagcaaaagataggg 18875225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 17372354 - 17372318
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  17372354 agggggtgcaaaatcgcacaattagcaaaaaataggg 17372318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 3687411 - 3687374
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3687411 gagggggtgcaaaatcgcacaattaacaaaagataggg 3687374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 5349733 - 5349767
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||||||||||||||    
T  5349733 ggggtgcaaaatcgcacaattaacaaaagataggg 5349767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 9412080 - 9412046
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||||||||||||||||    
T  9412080 gagggggtgcaaaatcgcacaattaacaaaagata 9412046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 8953886 - 8953923
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  8953886 gagggggtgcaaaattgcacaattaacaaaagataggg 8953923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 35080223 - 35080254
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagata 65  Q
    ||||||||||||||||||||||||||||||||    
T  35080223 ggggtgcaaaatcgcacaattaacaaaagata 35080254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 62
Target Start/End: Complemental strand, 5349519 - 5349489
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaag 62  Q
    |||||||||||||||||||||||||||||||    
T  5349519 agggggtgcaaaatcgcacaattaacaaaag 5349489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 3687653 - 3687690
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  3687653 gagggggtgcaaaatcgcacaattggcaaaagataggg 3687690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 6908265 - 6908232
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||    
T  6908265 gggtgcaaaatcgcacaattaacaatagataggg 6908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 9412322 - 9412359
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  9412322 gagggggtgcaaaatcgcacaattggcaaaagataggg 9412359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13772898 - 13772935
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  13772898 gagggggtgcaaaatcgcacaattagcaaatgataggg 13772935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 29291863 - 29291826
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  29291863 gagggggtgcaaaatcgcataattatcaaaagataggg 29291826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 34235977 - 34236010
Alignment:
Q  33 gggggtgcaaaatcgcacaattaacaaaagatag 66  Q
    ||||||||||||||||||||||| ||||||||||    
T  34235977 gggggtgcaaaatcgcacaattagcaaaagatag 34236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 38191566 - 38191599
Alignment:
Q  35 gggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||| ||||||||||||||||||    
T  38191566 gggtgcaaaatcgcataattaacaaaagataggg 38191599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17518389 - 17518325
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  17518389 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaacaaaagata 17518325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8108777 - 8108741
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||||||||||||||||    
T  8108777 agggggtgcaaaatcgcacaattaacaaaagataggg 8108741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 47955575 - 47955642
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||    
T  47955575 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaataaaagataggg 47955642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 13589656 - 13589693
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13589656 gagggggtgcaaaatcgcacaattagcaaaagataggg 13589693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 31848189 - 31848226
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  31848189 gagggggtgcaaaatcgtacaattaacaaaagataggg 31848226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 41083208 - 41083245
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| |||||||||||||||    
T  41083208 gagggggtgcaaaatcgcacaactaacaaaagataggg 41083245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 1176893 - 1176856
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  1176893 gagggggtgcaaaattgcacaattgacaaaagataggg 1176856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 17518599 - 17518636
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  17518599 gagggggtgcaaaatcgcacaattggcaaaagataggg 17518636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 47955363 - 47955326
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  47955363 gagggggtgcaaaatcgcacaattggcaaaagataggg 47955326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 22149701 - 22149733
Alignment:
Q  36 ggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||| ||||||||||||    
T  22149701 ggtgcaaaatcgcacaattagcaaaagataggg 22149733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 45623 - 45556
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||    
T  45623 agatagggtgcaaaatcgctcaaaaaaaaagagggagtgcaaaatcgcacaattaacaaaagataggg 45556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 45804 - 45841
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  45804 gagggggtgcaaaatcgcacaattggcaaaagataggg 45841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 15920835 - 15920799
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    |||||||||||||||||||||||||||||||||||||    
T  15920835 gagggggtgcaaaatcgcacaattaacaaaagatagg 15920799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30191192 - 30191259
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||||    
T  30191192 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattaataaaagataggg 30191259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40469514 - 40469448
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||| |||||||||||    
T  40469514 agatagggtgcaaaatcgctcaaaaaaaaagagggggtgcaaaatcgcacaattagcaaaagatagg 40469448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 11883680 - 11883643
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11883680 gagggggtgcaaaatcgcacaattagcaaaagataggg 11883643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 11883923 - 11883960
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11883923 gagggggtgcaaaatcgcacaattagcaaaagataggg 11883960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32672929 - 32672865
Alignment:
Q  1 agatagggtgcaaaatcgctcnnnnnnnnngagggggtgcaaaatcgcacaattaacaaaagata 65  Q
    |||||||||||||||||||||         ||| |||||||||||||||||||||||||||||||    
T  32672929 agatagggtgcaaaatcgctcaaaaaaaaagagagggtgcaaaatcgcacaattaacaaaagata 32672865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 40469726 - 40469763
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  40469726 gagggggtgcaaaatcgcacaattagcaaaagataggg 40469763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 6171207 - 6171175
Alignment:
Q  36 ggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||||||||||||    
T  6171207 ggtgcaaaatcgcacaattaacaaaagataggg 6171175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 20347217 - 20347185
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagatag 66  Q
    |||||||||||||||||||||||||||||||||    
T  20347217 ggggtgcaaaatcgcacaattaacaaaagatag 20347185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 26737537 - 26737501
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    ||||||||||||||||||||||||| |||||||||||    
T  26737537 gagggggtgcaaaatcgcacaattagcaaaagatagg 26737501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 24832385 - 24832351
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||| ||||||||||||    
T  24832385 ggggtgcaaaatcgcacaattagcaaaagataggg 24832351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 7591850 - 7591883
Alignment:
Q  34 ggggtgcaaaatcgcacaattaacaaaagatagg 67  Q
    ||||||||||||||||||||| ||||||||||||    
T  7591850 ggggtgcaaaatcgcacaattgacaaaagatagg 7591883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 20347461 - 20347498
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  20347461 gagggggtgcaaaatcgcacaattggcaaaagataggg 20347498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 30190980 - 30190943
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  30190980 gagggggtgcaaaatcgcacaattggcaaaagataggg 30190943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 6495723 - 6495755
Alignment:
Q  36 ggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||| |||||||||||||    
T  6495723 ggtgcaaaatcgcacaattcacaaaagataggg 6495755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 15321446 - 15321410
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  15321446 aggggatgcaaaattgcacaattaacaaaagataggg 15321410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 32673141 - 32673177
Alignment:
Q  32 agggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||  ||||||||||||    
T  32673141 agggggtgcaaaatcgcacaattggcaaaagataggg 32673177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 6451 - 6414
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6451 gagggggtgcaaaatcgcacaattagcaaaagataggg 6414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 6694 - 6731
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  6694 gagggggtgcaaaatcgcacaattagcaaaagataggg 6731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 25366 - 25403
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  25366 gagggggtgcaaaatcgcacaattagcaaaagataggg 25403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 205743 - 205706
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  205743 gagggggtgcaaaatcgcacaattagcaaaagataggg 205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 411979 - 411942
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||||||||||||||||||| |||||||||||||    
T  411979 gagggggtgcaaaatcgcacaattgacaaaagataggg 411942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 438987 - 438950
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  438987 gagggggtgcaaaatcgcacaattagcaaaagataggg 438950  T

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Target: scaffold1221 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1221
Description:

Target: scaffold1221; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 1781 - 1818
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  1781 gaggaggtgcaaaatcgcacaataaacaaaagataggg 1818  T

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Target: scaffold0376 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 7597 - 7634
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  7597 gagggggtacaaaatcgcacaattagcaaaagataggg 7634  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 16908 - 16871
Alignment:
Q  31 gagggggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  16908 gagggggtgcataatcgcacaattagcaaaagataggg 16871  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 6659 - 6627
Alignment:
Q  36 ggtgcaaaatcgcacaattaacaaaagataggg 68  Q
    ||||||||||| |||||||||||||||||||||    
T  6659 ggtgcaaaatcacacaattaacaaaagataggg 6627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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