View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_low_26 (Length: 245)

Name: NF8571_low_26
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_low_26
NF8571_low_26
[»] chr3 (6 HSPs)
chr3 (8-115)||(37119374-37119481)
chr3 (145-234)||(37119255-37119344)
chr3 (15-110)||(37131101-37131196)
chr3 (15-104)||(37135200-37135289)
chr3 (160-209)||(37124937-37124986)
chr3 (8-86)||(37125064-37125142)
[»] chr5 (1 HSPs)
chr5 (8-116)||(1193955-1194063)
[»] chr7 (1 HSPs)
chr7 (8-116)||(31296978-31297086)
[»] chr1 (1 HSPs)
chr1 (15-104)||(20269132-20269221)


Alignment Details
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 37119481 - 37119374
Alignment:
Q  8 tagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgtt 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37119481 tagcaaggatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgtt 37119382  T
Q  108 ggtgaagt 115  Q
    ||||||||    
T  37119381 ggtgaagt 37119374  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 37119344 - 37119255
Alignment:
Q  145 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatgatgt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37119344 caattgtagcatggccttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagggacgacccttcttgttccatcatgt 37119255  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 37131196 - 37131101
Alignment:
Q  15 gatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgttggt 110  Q
    ||||||||||||||||| ||||||||||||||  ||| || |||||||| ||| || ||||||||||||||||||||||| |||||||||||||||    
T  37131196 gatcaaatagaggtaacaggagaacaaatagattcagttagactcacatctctgctaagaaagaaattctgtcatgcagaattggtgagtgttggt 37131101  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 37135200 - 37135289
Alignment:
Q  15 gatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagt 104  Q
    ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||||||| || |||||||||||||||||    
T  37135200 gatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaagaaattcggttatgcagatttggtgagt 37135289  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 37124986 - 37124937
Alignment:
Q  160 cttgtgtagctggttatcctcattaccctgtccctgtgtgtgagataagg 209  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  37124986 cttgtgtagctagtattcctcattaccctgtccctgtgtgtgagataagg 37124937  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 37125142 - 37125064
Alignment:
Q  8 tagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgt 86  Q
    |||||| ||| |||| ||||| || |||||| |||||||| ||| || |||||||||||| || |||||||||||||||    
T  37125142 tagcaaggataaaatggaggttacaggagaataaatagactcagttagactcacatgtctgctaagaaagaaattctgt 37125064  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 1193955 - 1194063
Alignment:
Q  8 tagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgtt 107  Q
    |||||| |||||||||||| |||| ||||||||||||||| ||| || |||||||| ||| || ||||||||||||||||||||||| ||||||||||||    
T  1193955 tagcaaggatcaaatagagataacaggagaacaaatagactcagttagactcacatttctgctaagaaagaaattctgtcatgcagaattggtgagtgtt 1194054  T
Q  108 ggtgaagtg 116  Q
    |||||||||    
T  1194055 ggtgaagtg 1194063  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 31297086 - 31296978
Alignment:
Q  8 tagcaaagatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagtgtt 107  Q
    |||||| |||||||||||| |||| ||||||||||||||| ||| || | |||||| ||| || ||||||||||| ||||||||||| ||||||||||||    
T  31297086 tagcaaggatcaaatagagataacaggagaacaaatagactcagttagagtcacatctctgctaagaaagaaattatgtcatgcagaattggtgagtgtt 31296987  T
Q  108 ggtgaagtg 116  Q
    |||||||||    
T  31296986 ggtgaagtg 31296978  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 20269132 - 20269221
Alignment:
Q  15 gatcaaatagaggtaactggagaacaaatagacgcagctaaactcacatgtctacttagaaagaaattctgtcatgcagatttggtgagt 104  Q
    ||||||||||| |||||||||||| | || ||| ||| ||||||  ||| |||||| |||||||||||| || |||||||||||||||||    
T  20269132 gatcaaatagaagtaactggagaagagattgactcagttaaactggcatctctactaagaaagaaattcggttatgcagatttggtgagt 20269221  T

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