View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_27 (Length: 242)
Name: NF8571_low_27
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 52876376 - 52876167
Alignment:
| Q |
12 |
cagagaatagcaacaccaccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaaaattgggacgtttgctgctcataaa |
111 |
Q |
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| T |
52876376 |
cagagaatagcaacaccaccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaaaattgggacgtttgctgctcataaa |
52876277 |
T |
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| Q |
112 |
tttgaaaaacaaatgaaaagttaacaagcacacaatatgaaaaaagaacaaatattttactttttatgagaagaaataagacatatgttataccttaaag |
211 |
Q |
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| T |
52876276 |
tttgaaaaacaaatgaaaagttaacaagcacacaatatgaaaaaagaacaaatattttactttttatgagaagaaataagacatatgttataccttaaag |
52876177 |
T |
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| Q |
212 |
tgagagttac |
221 |
Q |
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|||||||||| |
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| T |
52876176 |
tgagagttac |
52876167 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 256424 - 256480
Alignment:
| Q |
30 |
ccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaa |
86 |
Q |
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| T |
256424 |
ccagcgagaaaatagaaatctccccaaatagaggtacattcacggtcttttgaccaa |
256480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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