View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_28 (Length: 242)
Name: NF8571_low_28
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 7294943 - 7295156
Alignment:
| Q |
11 |
acatcatgagacgtctcacttaaagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccactatttcctaactgttattacaatttt |
110 |
Q |
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| T |
7294943 |
acatcatgagacgtctcacttaaagattatgtgtgctgttaatgaaaaacaatgagtcttatttttatcaccattatttcctaactgttattacaatttt |
7295042 |
T |
|
| Q |
111 |
aatttagtttctttcaaaattaattcctcttcaattttgctttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7295043 |
aatttagtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagtt |
7295142 |
T |
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| Q |
211 |
cctacccaactcat |
224 |
Q |
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|||||||||||||| |
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| T |
7295143 |
cctacccaactcat |
7295156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 7291275 - 7291418
Alignment:
| Q |
69 |
ttatttttatcaccactatttcctaactgttattacaattttaatttagtttctttcaaaattaattcctcttcaattttgctttcacttggtgtctacc |
168 |
Q |
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|||||||||||| || |||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7291275 |
ttatttttatcatcattatttcctgactgttattatagttttaatt-agtttctttcaaaattaattcctcttcaattttgttttcacttggtgtctacc |
7291373 |
T |
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| Q |
169 |
tggatgtttaccctgctgttgtcaaattagagctcgtgagttcct |
213 |
Q |
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| T |
7291374 |
tagatgtttaccctgctgttgtcaaattagagcttgtgagttcct |
7291418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 26312611 - 26312694
Alignment:
| Q |
118 |
tttctttcaaaattaattcctcttcaattttgctttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagc |
201 |
Q |
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| T |
26312611 |
tttctttcacaattaatttctcttcaatttagtttccaataggggtccaccgagatgtttatcctgatgttgtcaaattagagc |
26312694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 26289759 - 26289860
Alignment:
| Q |
118 |
tttctttcaaaattaattcctcttcaattttgctttcacttggtgtctacctggatgtttaccctgctgttgtcaaattagagctcgtgagttcctaccc |
217 |
Q |
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||||||| | |||||||| | ||||||||| | ||||| | || ||| ||| ||||||||||||| |||||| ||||| ||||| ||| ||| |||||| |
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| T |
26289759 |
tttcttttacaattaatttcacttcaatttggttttcaataggggtccaccgagatgtttaccctgatgttgtaaaatttgagcttgtgtgttactaccc |
26289858 |
T |
|
| Q |
218 |
aa |
219 |
Q |
| |
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|| |
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|
| T |
26289859 |
aa |
26289860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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