View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_low_3 (Length: 550)

Name: NF8571_low_3
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_low_3
NF8571_low_3
[»] chr1 (6 HSPs)
chr1 (1-473)||(15504600-15505078)
chr1 (156-241)||(38474792-38474877)
chr1 (107-151)||(32462580-32462624)
chr1 (59-136)||(12287412-12287490)
chr1 (68-151)||(46874586-46874670)
chr1 (59-133)||(38480042-38480118)
[»] chr5 (6 HSPs)
chr5 (60-211)||(21134438-21134589)
chr5 (77-212)||(35138472-35138608)
chr5 (36-197)||(32811874-32812041)
chr5 (107-242)||(9724019-9724154)
chr5 (93-135)||(1531452-1531494)
chr5 (116-187)||(19629471-19629542)
[»] chr2 (6 HSPs)
chr2 (71-197)||(2419899-2420026)
chr2 (112-236)||(42510705-42510829)
chr2 (71-151)||(33643654-33643736)
chr2 (62-147)||(41420168-41420254)
chr2 (162-211)||(8951363-8951412)
chr2 (60-104)||(38771093-38771137)
[»] chr4 (2 HSPs)
chr4 (74-212)||(20993582-20993722)
chr4 (60-137)||(34069135-34069214)
[»] chr8 (4 HSPs)
chr8 (28-248)||(11567565-11567787)
chr8 (27-135)||(12211030-12211144)
chr8 (27-135)||(12455458-12455572)
chr8 (102-143)||(37377412-37377453)
[»] chr3 (2 HSPs)
chr3 (60-151)||(51866338-51866432)
chr3 (110-208)||(44240614-44240712)
[»] chr7 (3 HSPs)
chr7 (163-210)||(2033457-2033504)
chr7 (62-104)||(5832301-5832343)
chr7 (59-141)||(34726588-34726672)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 15504600 - 15505078
Alignment:
Q  1 tatattaagtttttccatctaat-tatctctttagtaaacattcatcaaaatcaacgaaatac-----atattaacttaaatagtctcttgttgcatcaa 94  Q
    |||||||||||| |||||| ||  |||||||||||||||||||| |||||||||| |||| |      ||||||||||||||||||||||||||||||||    
T  15504600 tatattaagtttgtccatcaaaaatatctctttagtaaacattcgtcaaaatcaatgaaagatctataatattaacttaaatagtctcttgttgcatcaa 15504699  T
Q  95 gacaaacataaactttaaaattgtggtgctaaatttgaaaaaatgactaaattgactatgctgtttaaatttaagggactaaattgctatttcttaaatt 194  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||    
T  15504700 gacaaacataaactttaaaattgtggtgctaaatttgaaaatatgactaaattgactaagctattcaaatttaagggactaaattgctatttcttaaatt 15504799  T
Q  195 tgaatgactaaattgaccaacctttacgatttgaaggactaatatgttgatttattcaataattaaagatccaagtatatatcattttgtgccacaacat 294  Q
    | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15504800 taaatgactaaattgaccaacctttacaatttgaaggactaatatgttgatttattcaataattgaagatccaagtatatatcattttgtgccacaacat 15504899  T
Q  295 gttaataatatttggctatattaaacatggggaccataatattgaaagaagcttatcaaatacagatatgaaagagatccaaccttcatttggttgtttt 394  Q
    |||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15504900 gttattaaaatttggctatatttaacatggggaccatagtattgaaagaagcttatcaaatacagatatgaaagagatccaaccttcatttggttgtttt 15504999  T
Q  395 cttgtgagttgttgaatgttgatactatgcatattttgatagtgatgggaaaaacaagcaaatggcttaggaatctttt 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15505000 cttgtgagttgttgaatgttgatactatgcatattttgatagtgatgggaaaaacaagcaaatggcttaggaatctttt 15505078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 38474792 - 38474877
Alignment:
Q  156 tgtttaaatttaagggactaaattgctatttcttaaatttgaatgactaaattgaccaacctttacgatttgaaggactaatatgt 241  Q
    ||||| ||||||||||||||||||||||||||| |||||| |  |||||||||||||| || |||| |||| ||||||||| ||||    
T  38474792 tgttttaatttaagggactaaattgctatttctcaaattttagggactaaattgaccacccgttacaatttcaaggactaaaatgt 38474877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 32462624 - 32462580
Alignment:
Q  107 ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgact 151  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  32462624 ctttaaaattgtggtgttaaatttgaaaaaatgactaaattgact 32462580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 12287412 - 12287490
Alignment:
Q  59 atacatattaacttaaatagtctcttgttgcatcaagacaaacata-aactttaaaattgtggtgctaaatttgaaaaa 136  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| ||| || ||||||  ||||| |||||| ||||    
T  12287412 atacatattaacttcaatagtctcttgttgcatcatgacaaacatagaacctttaaattgcagtgcttaatttggaaaa 12287490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 46874670 - 46874586
Alignment:
Q  68 aacttaaatagtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaaaaaatgactaaattgact 151  Q
    ||||| |||||||||||| |||||||||| ||||||  || ||| ||||||||||   |||||||| |||||||||||||||||||    
T  46874670 aacttgaatagtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttg-aaaaatgactaaattgact 46874586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 38480118 - 38480042
Alignment:
Q  59 atacatattaacttaaatagtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaa 133  Q
    ||||||||  |||||| |||| | |||||||||||||||||||||  || || |||||||||||||  |||||||||    
T  38480118 atacatatcgacttaactagttttttgttgcatcaagacaaacatagaacctgtaaaattgtggtgaaaaatttgaa 38480042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 211
Target Start/End: Original strand, 21134438 - 21134589
Alignment:
Q  60 tacatattaacttaaatagtctcttgttgcatcaagacaaacata-aacttt-aaaattgtggtgctaaatttgaaaaaatgactaaattgactatgctg 157  Q
    |||||||| |||| || ||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||| ||||| ||| | |||||  ||| ||    
T  21134438 tacatattgacttgaacagtctcttggtgcatcaagagaaacatagaacttttaaaattgtggtgctaaatttggaaaaaggaccacattga--atgatg 21134535  T
Q  158 tttaaatttaagggactaaattgctatttcttaaatttgaatgactaaattgac 211  Q
    || |||||||||||||||  |||||||||   | |||||||| |||||||||||    
T  21134536 ttcaaatttaagggactaggttgctatttagcatatttgaattactaaattgac 21134589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 35138472 - 35138608
Alignment:
Q  77 agtctcttgttgcatcaagacaaacataaa--ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgactatgctgtttaaatttaagggact 174  Q
    ||||||||| | ||||| || || ||||||  ||||||||| ||||||| |||||||| |||||||| ||||||||||   |  || |||||||||||||    
T  35138472 agtctcttgcttcatcaggagaagcataaaacctttaaaat-gtggtgcaaaatttgataaaatgacgaaattgactaacattgttcaatttaagggact 35138570  T
Q  175 aaattgctatttcttaaatttgaatgactaaattgacc 212  Q
    |||||||||||||  |||||||||  ||||||||||||    
T  35138571 aaattgctatttcgcaaatttgaaatactaaattgacc 35138608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 32811874 - 32812041
Alignment:
Q  36 aaacattcatcaaaatcaacgaaa----tacatattaacttaaatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtggtgctaaatt 129  Q
    |||||| |||||||||||| ||||    |||||||  |||| |||| |||||||||||||||||| ||  || ||  ||||||||||||| |||||||||    
T  32811874 aaacatccatcaaaatcaatgaaaaacctacatatccacttgaataatctcttgttgcatcaagataacaatgaaacctttaaaattgtgatgctaaatt 32811973  T
Q  130 tgaaaaaatgactaaattgactatgctgtttaaatttaagggactaaattgctatttcttaaatttga 197  Q
    || |||| | ||  |||||||||   |  || |||||||| ||||||||||||| ||| |||||||||    
T  32811974 tggaaaattaacataattgactaacattgttcaatttaagagactaaattgctacttcataaatttga 32812041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 9724154 - 9724019
Alignment:
Q  107 ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgact-atgctgtttaaatttaagggactaaattgctatttcttaaatttgaatgactaa 205  Q
    |||||||||||| || || |||||||||||| ||| ||||||| | ||  |||| || ||||||  | ||||||||||||| ||||||||||||||||||    
T  9724154 ctttaaaattgtagttctcaatttgaaaaaaggaccaaattgattgatattgttcaa-tttaagaaattaaattgctatttattaaatttgaatgactaa 9724056  T
Q  206 attgaccaacctttacgatttgaaggactaatatgtt 242  Q
    ||| | |||| |||  ||||| |||||| || |||||    
T  9724055 attaagcaacatttgtgattttaaggacaaaaatgtt 9724019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 1531452 - 1531494
Alignment:
Q  93 aagacaaacataaactttaaaattgtggtgctaaatttgaaaa 135  Q
    |||||| |||||||||| |||||||| ||||||||||||||||    
T  1531452 aagacagacataaacttcaaaattgttgtgctaaatttgaaaa 1531494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 19629542 - 19629471
Alignment:
Q  116 tgtggtgctaaatttgaaaaaatgactaaattgact-atgctgtttaaatttaagggactaaattgctatttc 187  Q
    ||||| ||||| |||| ||||||||| |||||| || ||| | ||||| ||||||||||||||||||||||||    
T  19629542 tgtggcgctaagtttggaaaaatgacgaaattggctgatgtt-tttaagtttaagggactaaattgctatttc 19629471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 2419899 - 2420026
Alignment:
Q  71 ttaaatagtctcttgttgcatcaagacaaacataaa-ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgactatgctgtttaaatttaag 169  Q
    ||||||||||| |||||||||||| ||||   |||| | || |||||||||||| ||||||||||||| ||||||||||| |    | ||||||||||||    
T  2419899 ttaaatagtcttttgttgcatcaaaacaagtgtaaaacctttaaattgtggtgcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaag 2419998  T
Q  170 ggactaaattgctatttcttaaatttga 197  Q
     |||||||||||||||||  ||||||||    
T  2419999 agactaaattgctatttcacaaatttga 2420026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 42510829 - 42510705
Alignment:
Q  112 aaattgtggtgctaaatttgaaaaaatgactaaattgactatgctgtttaaatttaagggactaaattgctatttcttaaatttgaatgactaaattgac 211  Q
    |||||||||||| |||||||||||| |||||||||||  |    | ||| |||||||||||||||| | |||||||  | |||| || ||||||||||||    
T  42510829 aaattgtggtgcaaaatttgaaaaattgactaaattgtttgacatttttcaatttaagggactaaactcctatttcgcagatttcaaggactaaattgac 42510730  T
Q  212 caacctttacgatttgaaggactaa 236  Q
    | |||||||| |||| |||||||||    
T  42510729 cgacctttacaatttcaaggactaa 42510705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 33643654 - 33643736
Alignment:
Q  71 ttaaatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgact 151  Q
    ||||||||||| ||| |||| |||||||| ||||||  ||||||| |||||||| |||||| ||||||||||||| |||||||    
T  33643654 ttaaatagtcttttgctgcaccaagacaatcataaaacctttaaacttgtggtgttaaattcgaaaaaatgactagattgact 33643736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 41420254 - 41420168
Alignment:
Q  62 catattaacttaaatagtctcttgttgcatcaagacaa-acataaactttaaaattgtggtgctaaatttgaaaaaatgactaaatt 147  Q
    |||||| ||||| ||||||| ||| | ||||||||||| | |||| || | |||||||||||||||||||| | ||| |||||||||    
T  41420254 catattcacttacatagtcttttgctacatcaagacaacatataacctctgaaattgtggtgctaaatttggagaaaggactaaatt 41420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 8951363 - 8951412
Alignment:
Q  162 aatttaagggactaaattgctatttcttaaatttgaatgactaaattgac 211  Q
    ||||||||||||||| ||||||||||  ||||||| | ||||||||||||    
T  8951363 aatttaagggactaatttgctatttcacaaatttggaggactaaattgac 8951412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 38771137 - 38771093
Alignment:
Q  60 tacatattaacttaaatagtctcttgttgcatcaagacaaacata 104  Q
    ||||||||||||| |||||| |||||| |||||||||| ||||||    
T  38771137 tacatattaacttgaatagtatcttgtcgcatcaagactaacata 38771093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 20993582 - 20993722
Alignment:
Q  74 aatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtggtgctaaatttgaaaaaatgactaaattgact-atgctgtttaaatttaagg 170  Q
    |||| ||||||| ||||||||||||||||||||  |||| |||||||||||||||||||| |||   |||||| |||| | ||| || || ||||||||     
T  20993582 aataatctcttggtgcatcaagacaaacataaaacctttgaaattgtggtgctaaatttggaaattggactaacttgattaatgttg-ttcaatttaagt 20993680  T
Q  171 gactaaattgctatttcttaaatttgaatgactaaattgacc 212  Q
    |||||| ||||||| || |||||||||   ||||||||||||    
T  20993681 gactaacttgctatatcataaatttgatgaactaaattgacc 20993722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 34069135 - 34069214
Alignment:
Q  60 tacatattaacttaaatagtctcttgttgcatcaagacaaacataaact--ttaaaattgtggtgctaaatttgaaaaaa 137  Q
    |||||||  |||||||||||   |||||||||||| |||||| ||| ||  ||||||||||||| | |||||||||||||    
T  34069135 tacatatcgacttaaatagttctttgttgcatcaaaacaaacctaatctgtttaaaattgtggtacaaaatttgaaaaaa 34069214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 11567787 - 11567565
Alignment:
Q  28 tctttagtaaacattcatcaaaatcaacgaaa----tacatattaacttaaatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtggt 121  Q
    |||||||| ||||| |||||||||||| ||||    |||||||| | |  |||| ||||| |||||||||||| || ||||||  |||||||||||||||    
T  11567787 tctttagttaacatccatcaaaatcaatgaaagacctacatattga-tggaataatctctggttgcatcaagataagcataaaacctttaaaattgtggt 11567689  T
Q  122 gctaaatttgaaaaaatgactaaattgactatgctg--tttaaatttaagggactaaattgctatttcttaaatttgaatgactaaattgaccaaccttt 219  Q
    |||||| ||| ||||| ||||||||||     || |   || ||||||||||| | |||| | ||||  |||||||||  ||||||||||||| ||| ||    
T  11567688 gctaaacttggaaaaaggactaaattg-----gccgacattcaatttaagggaatgaattaccattttgtaaatttgagggactaaattgaccgaccctt 11567594  T
Q  220 acgatttgaaggactaatatgttgattta 248  Q
    || |||| ||||||||| ||| |||||||    
T  11567593 acaatttcaaggactaaaatgctgattta 11567565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 12211030 - 12211144
Alignment:
Q  27 ctctttagtaaacattcatcaaaa----tcaacgaaatacatattaacttaaatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtgg 120  Q
    ||||||||||| ||||||||||||    |||| ||  |||||||| | || |||||||||||||| ||||||| | ||||||||  | |||||||||| |    
T  12211030 ctctttagtaatcattcatcaaaacctatcaaagacttacatattgagttgaatagtctcttgttacatcaagtccaacataaaaccattaaaattgttg 12211129  T
Q  121 tgctaaatttgaaaa 135  Q
     | ||||||||||||    
T  12211130 agttaaatttgaaaa 12211144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 12455458 - 12455572
Alignment:
Q  27 ctctttagtaaacattcatcaaaa----tcaacgaaatacatattaacttaaatagtctcttgttgcatcaagacaaacataaa--ctttaaaattgtgg 120  Q
    ||||||||||| ||||||||||||    |||| ||  |||||||| | || |||||||||||||| ||||||| | ||||||||  | |||||||||| |    
T  12455458 ctctttagtaatcattcatcaaaacctatcaaagacttacatattgagttgaatagtctcttgttacatcaagtccaacataaaaccattaaaattgttg 12455557  T
Q  121 tgctaaatttgaaaa 135  Q
     | ||||||||||||    
T  12455558 agttaaatttgaaaa 12455572  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 37377453 - 37377412
Alignment:
Q  102 ataaactttaaaattgtggtgctaaatttgaaaaaatgacta 143  Q
    |||| ||||||||||||||||| |||||||| ||||||||||    
T  37377453 ataacctttaaaattgtggtgcaaaatttgagaaaatgacta 37377412  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 51866432 - 51866338
Alignment:
Q  60 tacatattaacttaaatagtctcttgttgcatcaagacaa--acataaactttaaaattgtggtgctaaa-tttgaaaaaatgactaaattgact 151  Q
    ||||||||  ||| ||||||||||||  ||||||||||||  ||| || ||||||||| ||||||||||| |||| |||||||| ||||||||||    
T  51866432 tacatattttcttcaatagtctcttgccgcatcaagacaaagacagaatctttaaaatagtggtgctaaactttggaaaaatgattaaattgact 51866338  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 44240712 - 44240614
Alignment:
Q  110 taaaattgtggtgctaaatttgaaaaaatgactaaattgactatgctgtttaaatttaagggactaaattgctatttcttaaatttgaatgactaaatt 208  Q
    ||||||||  |||||||||||| | ||| |||||||||||||    |  ||  ||||||||||||||||||| ||||| ||||| |||| |||||||||    
T  44240712 taaaattgctgtgctaaatttggagaaaagactaaattgactggcattgttctatttaagggactaaattgccatttcataaatatgaaggactaaatt 44240614  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 2033504 - 2033457
Alignment:
Q  163 atttaagggactaaattgctatttcttaaatttgaatgactaaattga 210  Q
    |||| ||||||||||||| |||||| |||||||||| |||||||||||    
T  2033504 attttagggactaaattgttatttcataaatttgaaggactaaattga 2033457  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 5832343 - 5832301
Alignment:
Q  62 catattaacttaaatagtctcttgttgcatcaagacaaacata 104  Q
    |||||| |||||||||||||| ||||||||||||| |||||||    
T  5832343 catattgacttaaatagtctcatgttgcatcaagataaacata 5832301  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 34726672 - 34726588
Alignment:
Q  59 atacatattaacttaaatagtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaaaaaatgac 141  Q
    ||||||||| ||||||||||||| ||| |||||||| |||| |||  || |||| |||||| | ||  |||||||||||||||||    
T  34726672 atacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

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