View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_30 (Length: 205)
Name: NF8571_low_30
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 51190280 - 51190385
Alignment:
| Q |
13 |
cagagatcaatattttatgattaatcatatgcaaaggttgttcttgcttccactttgtaacattgctgcttccaccttcttcatgatcaagaagaacaag |
112 |
Q |
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| T |
51190280 |
cagagatcaatattttatgattaatcatatgcaaagtttgttcttgcttccactttgtaacattgctgcttccaccttcttcatgatcaagaagaacaag |
51190379 |
T |
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| Q |
113 |
ttcatg |
118 |
Q |
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|||||| |
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| T |
51190380 |
ttcatg |
51190385 |
T |
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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 51190421 - 51190462
Alignment:
| Q |
148 |
gtgatggttgtctctgaataaagatttcaagatttggatctt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
51190421 |
gtgatggttgtctctgaataaagatttcaagatttggatctt |
51190462 |
T |
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