View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8571_low_4 (Length: 485)
Name: NF8571_low_4
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 15090640 - 15091117
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatc---atcattcaacactcttacttcattttc |
97 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
15090640 |
tatcaaaagtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatcttcatcattcaacactcttacttcattttc |
15090739 |
T |
|
| Q |
98 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattgatgacgtggatgatacggacctccacatttaaaacatagtcctttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
15090740 |
atcttcagaatcatcctcaagcaccataacacgcaaatttttatccggacattgatgacgaggatgatacgggcctccacatttaaaacagagtcctttt |
15090839 |
T |
|
| Q |
198 |
ttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaa |
297 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
15090840 |
taacgacggtcagcaatctcctgtgaagacagactcctcacattcttgtcacgccaatttccagtgttggcagtgtgtgttttgttttgtccaacattaa |
15090939 |
T |
|
| Q |
298 |
acattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatt |
397 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15090940 |
acattccacgtgcaccacctgtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgccatt |
15091039 |
T |
|
| Q |
398 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtgaaccatgtgatcttcgtgatgtcca |
475 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
15091040 |
tctaccttcattctgtgtgacaaccttgtaaccaaaaacgggtcgagatagtgaaccatgtgaccttcgcgatgtcca |
15091117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 43011040 - 43010593
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatc---atcattcaacactcttacttcattttc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43011040 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatcttcatcattcaacactcttacttcattttc |
43010941 |
T |
|
| Q |
98 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattgatgacgtggatgatacggacctccacatttaaaacatagtcctttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43010940 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattgatgacgtggatgatacggacctccacatttaaaacagagtcctttt |
43010841 |
T |
|
| Q |
198 |
ttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaa |
297 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43010840 |
tgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaa |
43010741 |
T |
|
| Q |
298 |
acattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatt |
397 |
Q |
| |
|
|||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43010740 |
acattccacgtg---cacgattg---tttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatt |
43010647 |
T |
|
| Q |
398 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43010646 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
43010593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 43013337 - 43012890
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatc---atcattcaacactcttacttcattttc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43013337 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatcttcatcattcaacactcttacttcattttc |
43013238 |
T |
|
| Q |
98 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattgatgacgtggatgatacggacctccacatttaaaacatagtcctttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43013237 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattgatgacgtggatgatacggacctccacatttaaaacagagtcctttt |
43013138 |
T |
|
| Q |
198 |
ttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaa |
297 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43013137 |
tgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaa |
43013038 |
T |
|
| Q |
298 |
acattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatt |
397 |
Q |
| |
|
||||| |||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43013037 |
acatttcacgtg---cacgattg---tttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatt |
43012944 |
T |
|
| Q |
398 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43012943 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
43012890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 475
Target Start/End: Original strand, 25203451 - 25203934
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctg------tgtccacatc---atcattcaacactcttacttc |
91 |
Q |
| |
|
||||||| |||||| |||||||||||| | || |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
25203451 |
tatcaaaagtcaacaaattttcaaaagttaacaaattcaattgcaactcttctgcacctgcacctgtgtccacatcttcatcattcaacactcttacttc |
25203550 |
T |
|
| Q |
92 |
attttcatcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattgatgacgtggatgatacggacctccacatttaaaacatagt |
191 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||| ||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
25203551 |
attttcatcttcggaatcatcctcaagcaccataacacgcaaatttttatccgtacattgataacgaggatgatacgggcctccacatttaaaacagagt |
25203650 |
T |
|
| Q |
192 |
ccttttttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||| || |
|
|
| T |
25203651 |
ccttttttacgacggtcagcaatctcctgtgaagacagattcctcacattcttgtcacgccaatttccaatgttggtagtgtgtgttttgttttgtctaa |
25203750 |
T |
|
| Q |
292 |
cattaaacattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatc |
391 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25203751 |
cattaaacattccacgcaaaccacctatggatcttcctccactgtttcctccaggaaaatgatcacgattgtctttgttattacgaaccataacccaatc |
25203850 |
T |
|
| Q |
392 |
gctatttctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtgaaccatgtgatcttcgtgatgtcca |
475 |
Q |
| |
|
|| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
25203851 |
gccctttctaccttcattttgtgtaacaaccttgttaccaaaaacaggtcgagatagtgaaccatgtgaccttctcgatgtcca |
25203934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 236 - 475
Target Start/End: Complemental strand, 35075035 - 35074796
Alignment:
| Q |
236 |
cacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaaacattccacgtgcaccaccagtggattttcctccactg |
335 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
35075035 |
cacattcttgtcacgccaatttccagtgttggcagtgtgtgttttgttttgtcgaacattaaacattccacgtgcaccacctgtgaattttcctcaactg |
35074936 |
T |
|
| Q |
336 |
tttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatttctaccttcattctgtgtgacaactttgttaccaaaaa |
435 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35074935 |
tttcctccaagaaaacgatcatgattgtctttgttattatgaaccataacccgatcgccatttctaccttcattctgtgtgacaaccttgttaccaaaaa |
35074836 |
T |
|
| Q |
436 |
cgggtcgagatagtgaaccatgtgatcttcgtgatgtcca |
475 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
35074835 |
tgggtcgagatagtgaaccatgtgaccttcgcgatgtcca |
35074796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35075083 - 35075039
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgca |
45 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
35075083 |
tatcaaaagtaaacgcattttcaaaagtcaacacattcaattgca |
35075039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 25676328 - 25676775
Alignment:
| Q |
1 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatc---atcattcaacactcttacttcattttc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25676328 |
tatcaaaggtcaacgcattttcaaaagtcagcacattcaattgcaactcttctgcacctgtgtccacatcttcatcattcaacactcttacttcattttc |
25676427 |
T |
|
| Q |
98 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatctggacattgatgacgtggatgatacggacctccacatttaaaacatagtcctttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25676428 |
atcttcagaatcatcctcaagcaccataacactcaaatttttatccggacattgatgacgtggatgatacggacctccacatttaaaacagagtcctttt |
25676527 |
T |
|
| Q |
198 |
ttacgacggtcagcaatctcctgtgaagacagactccgcacattcttgtcacgccaatttgaagtgttgatagtgtgtgttttgttttgtccaacattaa |
297 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25676528 |
tgacgacggtcagcaatctcttgtgaagacagactccgcacattcttgtcacgccaatttgcagtgttgatagtgtgtgttttgttttgtccaacattaa |
25676627 |
T |
|
| Q |
298 |
acattccacgtgcaccaccagtggattttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaaccataacccaatcgctatt |
397 |
Q |
| |
|
|||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25676628 |
acattccacgtg---cacgattg---tttcctccactgtttcctccaggaaaacgatcacgattgtctttgttattacgaatcataacccaatcgctatt |
25676721 |
T |
|
| Q |
398 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25676722 |
tctaccttcattctgtgtgacaactttgttaccaaaaacgggtcgagatagtga |
25676775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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