View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8571_low_5 (Length: 484)

Name: NF8571_low_5
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8571_low_5
NF8571_low_5
[»] chr7 (2 HSPs)
chr7 (4-476)||(27153031-27153503)
chr7 (316-420)||(19193576-19193681)
[»] chr4 (4 HSPs)
chr4 (89-434)||(14291562-14291908)
chr4 (89-303)||(14307743-14307957)
chr4 (158-246)||(3881735-3881823)
chr4 (394-434)||(24133522-24133562)
[»] chr6 (2 HSPs)
chr6 (95-262)||(27852934-27853101)
chr6 (64-262)||(12645929-12646127)
[»] chr5 (2 HSPs)
chr5 (108-219)||(32874452-32874563)
chr5 (93-126)||(5864733-5864766)
[»] chr2 (3 HSPs)
chr2 (153-220)||(16322492-16322559)
chr2 (113-212)||(42403214-42403313)
chr2 (167-219)||(14653728-14653780)
[»] chr1 (3 HSPs)
chr1 (110-192)||(1525041-1525123)
chr1 (167-219)||(50236616-50236668)
chr1 (158-246)||(50451915-50452003)
[»] chr8 (4 HSPs)
chr8 (203-246)||(13030221-13030264)
chr8 (93-256)||(26708683-26708846)
chr8 (158-219)||(23132624-23132685)
chr8 (101-258)||(38348475-38348632)
[»] chr3 (2 HSPs)
chr3 (186-281)||(11889809-11889904)
chr3 (158-219)||(11897195-11897256)
[»] scaffold0214 (1 HSPs)
scaffold0214 (167-219)||(9011-9063)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 476
Target Start/End: Complemental strand, 27153503 - 27153031
Alignment:
Q  4 gagatggacatcatctgcaaagagaaggtgagaaattttggggtcgtttgtagagagacagatggtgtcccaggtaccttgattaacatcattgttgatg 103  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  27153503 gagaaggacatcatttgcaaagagaaggtgagaaatttaggggtcgtttgtagagagacagatgatgtcccaagtaccttgattaacatcattgttgatg 27153404  T
Q  104 gcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcc 203  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27153403 gcaatggagagcttttccatacaaaggataaataaatagggagagagatggtctccttgccgaaggccatgataaggcttgaaaggaggaatcttattcc 27153304  T
Q  204 cattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtatctagaaagccaaagttttggaagcaagattgaaggaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27153303 cattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtatctagaaagccaaagtcttggaagcaagattgaaggaa 27153204  T
Q  304 aatctagttgacgttgtaaaaatctttctctaaatcatgtttgaaagcaaccagaccctttttcttttatatctacgcatgtagtggatgatttcctgaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27153203 aatctagttgacgttgtaaaaatctttctctaaatcatgtttgaaagcaaccataccctttttcttttatatctacgcatgtagtggatgatttcctgaa 27153104  T
Q  404 aaacaacgacattatcagaagtgcctctaccagccaaacccttgattaacatcatttttggtaccaactcatt 476  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  27153103 aaacaacgacactatcagaagtgcctctaccaaccaaacccttgattaacatcatttttggtaccaattcatt 27153031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 420
Target Start/End: Original strand, 19193576 - 19193681
Alignment:
Q  316 gttgtaaaaatctttctctaaatcatgtttgaaagcaaccagaccctttttcttt-tatatctacgcatgtagtggatgatttcctgaaaaacaacgaca 414  Q
    ||||| |||| ||||||  |||||| ||||||||||||||| ||||||||||||  || |||||| ||||||||||||||||||||| |||| |||||||    
T  19193576 gttgtcaaaagctttcttgaaatcaagtttgaaagcaaccataccctttttcttcatagatctacacatgtagtggatgatttcctgcaaaataacgaca 19193675  T
Q  415 ttatca 420  Q
    ||||||    
T  19193676 ttatca 19193681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 434
Target Start/End: Complemental strand, 14291908 - 14291562
Alignment:
Q  89 acatcattgttgatggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaag 188  Q
    |||||||||||||||| |||||| || ||||||||| | | ||| || |  || || | | || | |||||||| |  |||||||| |||||||| ||||    
T  14291908 acatcattgttgatggaaatggaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaag 14291809  T
Q  189 gaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtatctagaaagccaaagttttggaa 288  Q
    || ||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| || ||||| |||||| ||||| |||||||||| | ||| |     
T  14291808 gatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag 14291709  T
Q  289 gcaagattgaaggaaaatctagttgacgttgtaaaaatctttctctaaatcatgtttgaaagcaaccagaccctttttctt-ttatatctacgcatgtag 387  Q
    ||| |||||||||||  || || | || || | |||  ||||||| || ||| | || || || ||| | ||||||||||| ||  |||| | ||| | |    
T  14291708 gcatgattgaaggaaggtccagcttacattatcaaaggctttctcaaagtcaagcttaaatgccacctgcccctttttcttctttgatctcctcatatgg 14291609  T
Q  388 tggatgatttcctgaaaaacaacgacattatcagaagtgcctctacc 434  Q
    || ||||||||||| ||||||||  ||||||||||||| ||||||||    
T  14291608 tgaatgatttcctgcaaaacaacagcattatcagaagtacctctacc 14291562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 303
Target Start/End: Complemental strand, 14307957 - 14307743
Alignment:
Q  89 acatcattgttgatggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaag 188  Q
    |||||||||||||||| |||||| || ||||||||| ||| ||| || |  || || | | || | |||||||| |  |||||||| |||||||| ||||    
T  14307957 acatcattgttgatggaaatggaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaag 14307858  T
Q  189 gaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtatctagaaagccaaagttttggaa 288  Q
    || ||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| || ||||| |||||| ||||| |||||||||| | ||| |     
T  14307857 gatgcatcttgttcccattccaaagaatagagagagtggaagaggtgacacaatgcatgataagcttaattgtaatatctggaaagccaaaatcttgaag 14307758  T
Q  289 gcaagattgaaggaa 303  Q
    ||| |||||||||||    
T  14307757 gcatgattgaaggaa 14307743  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 3881823 - 3881735
Alignment:
Q  158 ccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcat 246  Q
    ||||| || |||||||| | ||| |||||| | ||||| || || |||||||||| |||||| |  || ||||||||||||||||||||    
T  3881823 ccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaggtggaggaggtgacacaatgcat 3881735  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 24133522 - 24133562
Alignment:
Q  394 atttcctgaaaaacaacgacattatcagaagtgcctctacc 434  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  24133522 atttcctgcaaaacaacaacattatcagaagtacctctacc 24133562  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 27852934 - 27853101
Alignment:
Q  95 ttgttgatggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggaggca 194  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| || ||||  | | |||| ||||| |  || ||||||||||||||||||| |||||    
T  27852934 ttgttgatggcaatggagagcttttccatacaaaggatgaataagtaaggagataaagggtccccttgtcttagaccatgagaaggcttgaaagaaggca 27853033  T
Q  195 tcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgta 262  Q
    | || || || ||||| || ||||| ||| | |||||||| |||||||||||||| | |||| |||||    
T  27853034 ttttgtttccgttccaaagaatagagagaattgaggaggtaacacaatgcataatgaacttggttgta 27853101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 262
Target Start/End: Original strand, 12645929 - 12646127
Alignment:
Q  64 gatggtgtcccaggtaccttgattaacatcattgttgatggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgc 163  Q
    ||||| ||||||||  ||||| | |||  |||||||||| | ||| ||||||||||||||| |||| ||||| ||||| || | |||  | || |||| |    
T  12645929 gatggggtcccaggctccttgctgaactgcattgttgatagaaatagagagcttttccatacaaagaataaacaaataaggggagaggggatccccttac 12646028  T
Q  164 cgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgta 262  Q
    |  || |||||||| ||||||||| |||||||  | ||||||||||| |||||||||||||| || || |||||||||||||| || ||||| ||||||    
T  12646029 ctgagaccatgagatggcttgaaaagaggcataatgttcccattccaaaggatagaaagagtggatgaagtgacacaatgcatgataagcttaattgta 12646127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 219
Target Start/End: Original strand, 32874452 - 32874563
Alignment:
Q  108 tggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccatt 207  Q
    ||||||||||||||||  ||| ||| ||||||||||||| |||  |||||||||| || |||||||||||||||||||||||||||| ||| ||||||||    
T  32874452 tggagagcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatt 32874551  T
Q  208 ccataggataga 219  Q
     || ||||||||    
T  32874552 tcaaaggataga 32874563  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 5864733 - 5864766
Alignment:
Q  93 cattgttgatggcaatggagagcttttccatata 126  Q
    ||||||||||||||| ||||||||||||||||||    
T  5864733 cattgttgatggcaagggagagcttttccatata 5864766  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 16322559 - 16322492
Alignment:
Q  153 ggtctccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggatagaa 220  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||| || ||||||||||||| ||||    
T  16322559 ggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgtttccattccataggagagaa 16322492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 42403214 - 42403313
Alignment:
Q  113 agcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccata 212  Q
    |||||||||||  | || ||||||| ||| || | |||| |||| |||||||| ||||||||||  ||||||||||||||||| ||||| || |||||||    
T  42403214 agcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggcattttatttccgttccata 42403313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 14653728 - 14653780
Alignment:
Q  167 aggccatgagaaggcttgaaaggaggcatcttattcccattccataggataga 219  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| || |||||    
T  14653728 aggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtataga 14653780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 1525123 - 1525041
Alignment:
Q  110 gagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggagg 192  Q
    ||||||||||||||| | || |||||||| |||||||  ||  |||| ||||||||||| || || |||||||||||||||||    
T  1525123 gagagcttttccatacagagaataaataagtagggagatagcgggtcaccttgccgaagaccgtgggaaggcttgaaaggagg 1525041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 50236616 - 50236668
Alignment:
Q  167 aggccatgagaaggcttgaaaggaggcatcttattcccattccataggataga 219  Q
    |||||||||| |||||||||||| |||||||| ||||| ||||||| ||||||    
T  50236616 aggccatgagtaggcttgaaagggggcatcttgttcccgttccataagataga 50236668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 50452003 - 50451915
Alignment:
Q  158 ccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcat 246  Q
    ||||| || |||||||| | ||| |||||| | ||||| || || |||||||||| |||||| | ||| ||||||||||||||||||||    
T  50452003 ccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccataagatagagaaagtggaggaggtgacacaatgcat 50451915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 13030264 - 13030221
Alignment:
Q  203 ccattccataggatagaaagagtcgaggaggtgacacaatgcat 246  Q
    |||||||| |||||||||||||| || |||||||||||||||||    
T  13030264 ccattccaaaggatagaaagagttgaagaggtgacacaatgcat 13030221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 256
Target Start/End: Original strand, 26708683 - 26708846
Alignment:
Q  93 cattgttgatggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggagg 192  Q
    ||||||| ||||| || ||||||||||||||| | || || || |  || |||| |||| |||| || || ||||| |||||||| ||||| ||  ||||    
T  26708683 cattgttaatggcgatagagagcttttccatacacagtatgaaaaggtaaggagagagagggtcaccctggcgaagaccatgagatggcttaaattgagg 26708782  T
Q  193 catcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttg 256  Q
     | ||| || ||||||||||| || || | ||| || || ||||||||||||||||| ||||||    
T  26708783 aagcttgtttccattccatagaattgagaaagtagatgaagtgacacaatgcataatgagcttg 26708846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 23132624 - 23132685
Alignment:
Q  158 ccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggataga 219  Q
    ||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||| || |||||    
T  23132624 ccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtataga 23132685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 38348632 - 38348475
Alignment:
Q  101 atggcaatggagagcttttccatataaaggataaataaatagggagcgagatggtctccttgccgaaggccatgagaaggcttgaaaggaggcatcttat 200  Q
    |||||||  ||||||||||||||| |||| |||||||||||  |||  ||  |||| ||||| |||||  | || |||||||||||||||| ||   | |    
T  38348632 atggcaaccgagagcttttccatacaaagaataaataaatatagagatagcaggtcaccttgacgaagatcgtgggaaggcttgaaaggagacaatctgt 38348533  T
Q  201 tcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgat 258  Q
    | |||||||| |||||||| |  || |  ||||| ||||||||||| || ||||||||    
T  38348532 tgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgat 38348475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 11889809 - 11889904
Alignment:
Q  186 aaggaggcatcttattcccattccataggatagaaagagtcgaggaggtgacacaatgcataattagcttgattgtagtatctagaaagccaaagt 281  Q
    |||||||||| || ||||||||||||||||| || | ||| || ||||||||||| ||||| || ||||| || ||| ||||| | || |||||||    
T  11889809 aaggaggcattttgttcccattccataggatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagt 11889904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 11897256 - 11897195
Alignment:
Q  158 ccttgccgaaggccatgagaaggcttgaaaggaggcatcttattcccattccataggataga 219  Q
    ||||| || ||||||||||||||||||||||| |||| ||| ||||| ||||| || |||||    
T  11897256 ccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtataga 11897195  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 9063 - 9011
Alignment:
Q  167 aggccatgagaaggcttgaaaggaggcatcttattcccattccataggataga 219  Q
    |||||||||||||||| ||||||||||| | |||| |||||||| || |||||    
T  9063 aggccatgagaaggctcgaaaggaggcagcctattaccattccaaagaataga 9011  T

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