View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_6 (Length: 470)
Name: NF8571_low_6
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 1124253 - 1123794
Alignment:
| Q |
1 |
caatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgatatacaaccctggtg |
100 |
Q |
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| T |
1124253 |
caatggcagctacattatatgtgaaaatctgaaatacttaatgactttcataattttcaaccaaatcatataagtaaattcctgatatacaaccctggtg |
1124154 |
T |
|
| Q |
101 |
tagtctagcgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgcacctggattccaa |
200 |
Q |
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| T |
1124153 |
tagtctagtgtagaaaaacctagccggtggtcataaggaaaggtaattaataattataaacgcattaggaaaacaaaagtcacatgcacctggattccaa |
1124054 |
T |
|
| Q |
201 |
gtattttatcattatttgccagctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatctatcatttactga |
300 |
Q |
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| T |
1124053 |
gtattttatcattatttgccagctcaattaaaagttgcctcagcttagcttcaacgttagaatggactggggaatcaaaaacccatctatcatttactga |
1123954 |
T |
|
| Q |
301 |
tggtcctctattaataaacctgggaagtccacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgnnnnnnnaagnnnnnnn |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1123953 |
tggtcctctattaataaacctgggaagtcaacctcatgtcagccataggtgaaacaagcaatgaagaagatactaataatttgtttttttaagaaaaaaa |
1123854 |
T |
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| Q |
401 |
nnnnnnncaaatgactcacccactcaaaacagattctgcaaatggcctcatgatgtccat |
460 |
Q |
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| T |
1123853 |
gaaaaaacaaatgactcacccactcaaaacagattctgcaaatggcttcattatgtccat |
1123794 |
T |
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