View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_7 (Length: 467)
Name: NF8571_low_7
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 269 - 445
Target Start/End: Original strand, 46655076 - 46655252
Alignment:
| Q |
269 |
gtatcaaatcgttctactgtggtttgtgctcaactcacagttcaacaatctgccgtgaagctcattctcagtgacatggttcaggcaaaggcactgatgt |
368 |
Q |
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| T |
46655076 |
gtatcaaatcgttctactgtggtttgtgctcaactcagagttcaacaatctgtcgtggagctcattctcagtgacatggttcaggcaaaggcactgatgt |
46655175 |
T |
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| Q |
369 |
agtggaggttaggcttgaccacgtcacagattttcaacctccccgtgaccttcaaaccatcctgatcaccaataaac |
445 |
Q |
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| T |
46655176 |
agtggaggttaagcttgaccacataacaaattttcaacctcgccgtgaccttcaaaccatcctgatcactaataaac |
46655252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 47110909 - 47110733
Alignment:
| Q |
20 |
tcttgatcatgtcaatgacagtcatatttagcttatcattgtagacacttcttgtagttgttagtgttttcaaattctattttcaacttatctgacttag |
119 |
Q |
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| T |
47110909 |
tcttgatcatgtcaatgacagtcatatttagcttatcattgtagaca---cttgtacttgttggtgttttcaaattctattttcaacttatctgaattag |
47110813 |
T |
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| Q |
120 |
accctatatatattcatcctcctataagttaaacttgagctctcacttcactaccaacatataaccatcatacagataaatgcaa |
204 |
Q |
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| T |
47110812 |
accc----tatattcatcctcctatgagttaaacttgagctctcacttcactaccaacacatgatcatcattca-ataaatgcaa |
47110733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 47110452 - 47110369
Alignment:
| Q |
211 |
taatttatttgtgggcgatacaaatcttct-tttcagacatatggaaagttatggatcagtatcaaatcgttctactgtggttt |
293 |
Q |
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| T |
47110452 |
taatttatttgtggtcgatacaaatctcttctttaagacatgtggaaagttatggatcagtatcaaatcgttctgctgtggttt |
47110369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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