View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_8 (Length: 449)
Name: NF8571_low_8
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 29770050 - 29770482
Alignment:
| Q |
1 |
ttaactgaagtaaggaatgtgaaaatgattgattgctaacttgctgtattttggttaaaattcgttttgaactcatgttatttttggtttacaatgtcat |
100 |
Q |
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| T |
29770050 |
ttaactgaagtaaggaatgtgaaaatgattgattgctaacttgctgtattttggttaaaattcgttttgaactcatgttatttttggtttacaatgtcat |
29770149 |
T |
|
| Q |
101 |
ctagtgtgtaatgaaaattatcaaattaattaaattgatannnnnnnnnatcactatatatttggaaactata-tcctattcaaatatggtacgaaatta |
199 |
Q |
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| T |
29770150 |
ctagtgtgtaatgaaaattatcaaattaattaaattgatttttttttttatcactatatatttggaaactatgctcctattcaaatatggtacgaaatta |
29770249 |
T |
|
| Q |
200 |
ttgttcattcaatttaaggactaatttatgatggtgaccaacacactgcgtgtgaacaggctaattttactatggtactaaattattggtttacaattgt |
299 |
Q |
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| T |
29770250 |
ttgttcattcaatttaaggactaatttatgatggtgaccaacacactgcgtgtgaacaggctaattttactatggtactaaattattggtttacaattgt |
29770349 |
T |
|
| Q |
300 |
cagctagtatatgaaaatataagaaagttgattaaagtataagtcaacagggtagttgatatagagcagaaaatttcataaagtcatacagttaca-nnn |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29770350 |
cagctagtatatgaaaatataagaaagttgattaaagtataagtcaacagggtagttgatatagagcagaaaatttcataaagtcatacagttacatttt |
29770449 |
T |
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| Q |
399 |
nnnnncccattaggtaatctcattgaatgactg |
431 |
Q |
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| T |
29770450 |
tttttcccattaggtaatctcattgaatgactg |
29770482 |
T |
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