View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8571_low_9 (Length: 440)
Name: NF8571_low_9
Description: NF8571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8571_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 8767156 - 8766931
Alignment:
| Q |
18 |
atttcacaccaattcttggtgcttttcttgctgattcttactttggccgctaccctaccatcgtctttggcttgcttctcaatttacttgtaagttcgta |
117 |
Q |
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| T |
8767156 |
atttcacaccaattcttggtgcttttcttgctgattcttactttggccgctaccctaccatcgtctttggcttgcttctcaatttacttgtaagttcgtt |
8767057 |
T |
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| Q |
118 |
tttatcgttaagaattagatacggtttgacaatgtgtgt-------gtggatagtcatcacctagcaaatcagcggttttgc-----tgagttgatcctc |
205 |
Q |
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| T |
8767056 |
tttattgttaagaattagatacggtttgacaatgtgtgtgtaactggtggatagtccttaccttacaaatcagctgttttgctcagttgagttgatcccc |
8766957 |
T |
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| Q |
206 |
aaattcttagatttatcttagaaatc |
231 |
Q |
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| T |
8766956 |
aaattcttagatttatcttagaaatc |
8766931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 8766879 - 8766827
Alignment:
| Q |
376 |
tttagattgcacttccaccatattagctttaaataatcttcaccaccgttgat |
428 |
Q |
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| T |
8766879 |
tttagattgcacttccaccatattagctttaaataatcttcaccaccgttgat |
8766827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 8749566 - 8749462
Alignment:
| Q |
18 |
atttcacaccaattcttggtgcttttcttgctgattcttactttggccgctaccctaccatcgtctttggcttgcttctcaatttacttgtaagttcgta |
117 |
Q |
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| T |
8749566 |
attttacaccaattatcggtgcttttcttgccgattcctattttggtcgctacgctaccatcgcctttggatctgttctcggtttacttgtaagttcgta |
8749467 |
T |
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| Q |
118 |
tttat |
122 |
Q |
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||||| |
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| T |
8749466 |
tttat |
8749462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 8758828 - 8758760
Alignment:
| Q |
19 |
tttcacaccaattcttggtgcttttcttgctgattcttactttggccgctaccctaccatcgtctttgg |
87 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||||||| ||||||| |||||| |||||||| |
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| T |
8758828 |
tttcacaccaattgttggagcttttcttgctgattcctactttggtcgctaccttaccattgtctttgg |
8758760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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