View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8572_low_2 (Length: 467)
Name: NF8572_low_2
Description: NF8572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8572_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 28411812 - 28411357
Alignment:
| Q |
1 |
cgaattggtgcttgcatacaaattcactgcttttgccgtattttttggaaccccttttcagctctaagcctctatcttatccaactcaagcatagtaaaa |
100 |
Q |
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| T |
28411812 |
cgaattggtgcttgcatacaaattcactgctattgccgtattttttggaacccctttttagctctaagcctctatcttatccaagtcaagcatagtaaaa |
28411713 |
T |
|
| Q |
101 |
tgaggaatttttgttgggatttcttactttgaaatgagaccctttcttgtccggttctcttcctagttgtaagcttttgatgaaagatatgcagtctaat |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411712 |
tgagaaatttttgttgggatttcttactttgaaatgagaccctttcttgtccggttctcttcctagttgtaagcttttgatgaaagatatgcagtctaat |
28411613 |
T |
|
| Q |
201 |
agttagttttatacattgcaagcaatgatgcttactatcatttcaggcagcagaagaatgtacttcggtgcttgagcttgatagcaatcacagtggagca |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411612 |
agttagttttatacgttgcaagcaatgatgcttactatcatttcaggcagcagaagaatgtacttcggtgcttgagcttgatagcaatcacagtggagca |
28411513 |
T |
|
| Q |
301 |
ttgatgctgagggctcaaacactggtgacactgaaggagtaccatttagcactttttgatgtcaacagactcttggagttgaatccatcctcagaagtct |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28411512 |
ttgatgctgagggctcaaactctggtgacactgaaggagtaccattcagcactttttgatgtcaacagactcttggagttgaatccatcctcagaagtct |
28411413 |
T |
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| Q |
401 |
atcaaaatcttcatgctcgcttgaagacacagttggtacgatgttgttcctttcat |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
28411412 |
atcaaaatcttcatgctcgcttgaagacacagttggtatgatgttgttcctttcat |
28411357 |
T |
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