View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8572_low_3 (Length: 463)
Name: NF8572_low_3
Description: NF8572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8572_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 14597407 - 14597838
Alignment:
| Q |
20 |
caaggccggtgtagtttcacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597407 |
caaggccggtgtagtttcacagacttcatccgtacattcatgtttaggatcttttgtgtcccaatcacctgagggagggtcaaatccatacaatgcaaac |
14597506 |
T |
|
| Q |
120 |
cgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597507 |
cgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagc |
14597606 |
T |
|
| Q |
220 |
gatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgc |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597607 |
gatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgc |
14597706 |
T |
|
| Q |
320 |
cttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagct |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
14597707 |
cttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctcgaactagtgcattcatggcaccagct |
14597806 |
T |
|
| Q |
420 |
ttcttgttgtgatcataacctggcttcttctc |
451 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
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|
| T |
14597807 |
ttcttgttgtgatcataacctggcctcttctc |
14597838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 80 - 451
Target Start/End: Complemental strand, 14611038 - 14610667
Alignment:
| Q |
80 |
ccaatcacctgagggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctc |
179 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
14611038 |
ccaatcacccgtgggagggtcaaatccgtacaatgcaaatctcctgaacatgcacccggttcccacataaaatggaccttggagaccatcaagggctctc |
14610939 |
T |
|
| Q |
180 |
atgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgc |
279 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
14610938 |
atgttcccgtcaaagaacacggtgttgtgattggcatagcgatctgagggatcaataccttcaaatctttgagggaactgaatatagcatatgtcttcgc |
14610839 |
T |
|
| Q |
280 |
cacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaa |
379 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
14610838 |
cacctttgtccatcatgaaacacattccttcttttactgccttgcaattatagatatagtgatcacaatcaagattgagaatgaatggcccatttgatag |
14610739 |
T |
|
| Q |
380 |
gattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcataacctggcttcttctc |
451 |
Q |
| |
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|| ||||||||||| ||| | ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
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|
| T |
14610738 |
gactgcagatgctcgaacaagtgcattcatggcaccggctttcttgttatgatcataacctggcctcttctc |
14610667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 93 - 442
Target Start/End: Original strand, 29917837 - 29918186
Alignment:
| Q |
93 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaa |
192 |
Q |
| |
|
||||| ||||| ||||| | ||||||| ||||||| || |||||||| ||||| | ||| |||||||| ||||| |||||||||||||| | |||| |
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|
| T |
29917837 |
ggaggatcaaaaccataaagagcaaaccttctaaacagacagccggttcctacatagactgggccttgaagtccatcaagggctctcatgttaacatcaa |
29917936 |
T |
|
| Q |
193 |
agaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccag |
292 |
Q |
| |
|
|||| || ||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || | |||||| | | || ||||| |||| |
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|
| T |
29917937 |
agaagacggtgttgtgattagcatatctatcagagggatcaataccctcaaacctttgagggaattggacatagcagaggcgatcaccaccacgatccat |
29918036 |
T |
|
| Q |
293 |
catgaagcacataccttcacgtactgccttacaattatagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgct |
392 |
Q |
| |
|
||| |||||||||||||| | | ||| || | || || |||||||||||||| || || || || || || || || || |||| || || || ||| |
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|
| T |
29918037 |
cataaagcacataccttccctcattgctttggagttgtatatatagtgatcacagtcgaggttaagtataaagggaccgttggacatgacagccgaggct |
29918136 |
T |
|
| Q |
393 |
ctaactaatgcattcatggcaccagctttcttgttgtgatcataacctgg |
442 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
29918137 |
ctaaccaatgcattcatggccccagcttttttgttgtgatcgtaacctgg |
29918186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 453
Target Start/End: Complemental strand, 44634492 - 44634168
Alignment:
| Q |
129 |
atgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagg |
228 |
Q |
| |
|
||||| || ||||| ||||| | ||||||||| | |||||| || ||||||||| | | |||||||| || |||||||| || ||||| ||||| || |
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|
| T |
44634492 |
atgcagccagttccaacatacattggaccttgtaaaccatcaagagctctcatgctcacatcaaagaacacggtgttgtggtttgcatatcgatcactgg |
44634393 |
T |
|
| Q |
229 |
gatcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaatt |
328 |
Q |
| |
|
| |||||||||||||| ||||| ||||| |||| ||| ||||| || |||||| |||| ||||| |||||||||||||| | | ||| | || |
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|
| T |
44634392 |
ggtcaataccttcaaacctttgagggaattgaacataacatatcctgtcaccacctctgtcaagcataaagcacataccttccctcaaggccaaggagtt |
44634293 |
T |
|
| Q |
329 |
atagatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttg |
428 |
Q |
| |
|
||||| || |||||||| ||||||||||||| |||||||||||| |||| || ||| | || ||| | ||||||||||| ||||||||||||||| |
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|
| T |
44634292 |
gtagatgtaatgatcacagtcaagattgagaacgaatggtccattggacatgacagcactagttcgaacaagagcattcatggcgccagctttcttgttg |
44634193 |
T |
|
| Q |
429 |
tgatcataacctggcttcttctcac |
453 |
Q |
| |
|
|||||||| || ||| ||||||||| |
|
|
| T |
44634192 |
tgatcatatcccggcctcttctcac |
44634168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 440
Target Start/End: Complemental strand, 47919349 - 47919046
Alignment:
| Q |
137 |
ggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaata |
236 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||| |||||||||||||| | |||||||| |||||||||||||| ||||| | ||| |||||||||||| |
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|
| T |
47919349 |
ggttcctacatagaacgggccttgaagtccatcaagggctctcatgttaacatcaaagaagacagtgttgtgattagcatatctatcagagggatcaata |
47919250 |
T |
|
| Q |
237 |
ccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattatagatat |
336 |
Q |
| |
|
|| ||||| || |||||||| || | |||||| | | || ||||| |||| ||| |||||||||||||| | | ||| || | || || |||| |
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|
| T |
47919249 |
ccctcaaacctctgggggaattggacatagcagaggcgatccccaccacgatccatcataaagcacataccttccctcattgctttggagttgtaaatat |
47919150 |
T |
|
| Q |
337 |
agtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtgatcata |
436 |
Q |
| |
|
|||||||||| || |||||||| || || || || || |||| || || || ||||| || |||||||||| || |||||||| ||||||||||| || |
|
|
| T |
47919149 |
agtgatcacagtcgagattgagtataaaaggaccgttggacatgacagctgaagctctgaccaatgcattcactgccccagcttttttgttgtgatcgta |
47919050 |
T |
|
| Q |
437 |
acct |
440 |
Q |
| |
|
|||| |
|
|
| T |
47919049 |
acct |
47919046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 41490529 - 41490666
Alignment:
| Q |
131 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
230 |
Q |
| |
|
||||||||| || ||||| | ||||| |||| ||||||||| |||| ||| || | |||||||| |||||||||||||||||||| ||||| || || |
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|
| T |
41490529 |
gcatccggtaccaacatatacaggaccctgaataccatcgagagctcgcatattgacatcaaagaagacagtgttgtgattggcataccgatctgatggg |
41490628 |
T |
|
| Q |
231 |
tcaataccttcaaatctttgggggaactgaatatagca |
268 |
Q |
| |
|
||||| ||||||||||||||||| || |||| |||||| |
|
|
| T |
41490629 |
tcaattccttcaaatctttggggaaattgaacatagca |
41490666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 436
Target Start/End: Original strand, 12193221 - 12193526
Alignment:
| Q |
131 |
gcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttccgtcaaagaatacagtgttgtgattggcatagcgatccgaggga |
230 |
Q |
| |
|
|||||| || || ||||||| ||||| |||| ||||||||| |||||||| || | |||||||| |||||||| ||||||||||| ||||| || || |
|
|
| T |
12193221 |
gcatccagtaccaacataaacaggaccctgaataccatcgagagctctcatattgacatcaaagaagacagtgttatgattggcataccgatctgatggg |
12193320 |
T |
|
| Q |
231 |
tcaataccttcaaatctttgggggaactgaatatagcatatgtcttcgccacctttgtccagcatgaagcacataccttcacgtactgccttacaattat |
330 |
Q |
| |
|
|| || |||||||| ||||| || || |||| ||||| || | || ||| | ||||| ||| ||||||||||||| | | ||||| | | |||| |
|
|
| T |
12193321 |
tcgattccttcaaacctttgaggaaattgaacatagctgatcttgtccccatcgcggtccatcatatagcacataccttccctgattgcctcagagttat |
12193420 |
T |
|
| Q |
331 |
agatatagtgatcacaatcaagattgagaatgaatggtccatttgacaagattgcagatgctctaactaatgcattcatggcaccagctttcttgttgtg |
430 |
Q |
| |
|
| || || || ||||| |||||||| || ||||| || ||||| |||| | || || |||| ||| || ||||||||||| || |||||||| ||||| |
|
|
| T |
12193421 |
atatgtaatggtcacagtcaagattaagtatgaaaggaccattagacattacggctgaagctcgaaccaaggcattcatggcccccgctttcttattgtg |
12193520 |
T |
|
| Q |
431 |
atcata |
436 |
Q |
| |
|
|||||| |
|
|
| T |
12193521 |
atcata |
12193526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 15418526 - 15418587
Alignment:
| Q |
186 |
ccgtcaaagaatacagtgttgtgattggcatagcgatccgagggatcaataccttcaaatct |
247 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15418526 |
ccgtcaaagaagactgtgttatgatttgcatatcgatccgagggatcaatcccttcaaatct |
15418587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 15418044 - 15418138
Alignment:
| Q |
93 |
ggagggtcaaatccatacaatgcaaaccgcctaaacatgcatccggttcccacataaaatggaccttgaagaccatcgagggctctcatgtttcc |
187 |
Q |
| |
|
||||| ||||||||||| | |||| | | |||||||||||| |||||||| ||||| | ||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
15418044 |
ggaggttcaaatccatagagtgcatatctcctaaacatgcaaccggttccgacatacattggaccttgtagaccatccaatgctctcatatttcc |
15418138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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