View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8572_low_5 (Length: 229)
Name: NF8572_low_5
Description: NF8572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8572_low_5 |
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| [»] scaffold1683 (1 HSPs) |
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Alignment Details
Target: scaffold1683 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold1683
Description:
Target: scaffold1683; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 1014 - 1221
Alignment:
| Q |
18 |
acttatataaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattttgttgacttcat |
117 |
Q |
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| T |
1014 |
acttatacaaataatgtctaacaataaaagataatcaatttcttcaggttagtgcaacatttaatacactgcacagataatcaaattttgttgacttcat |
1113 |
T |
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| Q |
118 |
tttgtttaaa-------------tgaagtgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatgacatattgaagc |
204 |
Q |
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| T |
1114 |
tttgtttaaaaaaacaataatgttgaagcgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatggcatattgaagc |
1213 |
T |
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| Q |
205 |
gtttataa |
212 |
Q |
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|||||||| |
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| T |
1214 |
gtttataa |
1221 |
T |
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Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 41528353 - 41528557
Alignment:
| Q |
18 |
acttatataaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattttgttgacttcat |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41528353 |
acttatacaaataatgtctaacaataaaagataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaatttcgttgacttcat |
41528452 |
T |
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| Q |
118 |
tttgtttaaa-------------tgaagtgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttcatgacatattgaagc |
204 |
Q |
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| T |
41528453 |
tttgtctaaagaaacaataatgttaaagcgaaaagaaaagatttggattaggattagaaagtaactatggatcatttacgacttaatggcacattgaagc |
41528552 |
T |
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| Q |
205 |
gttta |
209 |
Q |
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||||| |
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| T |
41528553 |
gttta |
41528557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 39873248 - 39873186
Alignment:
| Q |
48 |
ataatcaatttcttcaggttagtgcagcaattaatacactgcacagataatcaaattttgttga |
111 |
Q |
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||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
39873248 |
ataatcactttcttc-ggttagtgcaacaattaatacactgcatagataatcaaattttgttga |
39873186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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