View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_high_1 (Length: 717)
Name: NF8573_high_1
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 32802539 - 32802351
Alignment:
| Q |
1 |
ttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaaaacatttgggctatttgctaa |
100 |
Q |
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| T |
32802539 |
ttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaaaacatttgggctatttgctaa |
32802440 |
T |
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| Q |
101 |
gtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgtgtgtaaagag |
189 |
Q |
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| T |
32802439 |
gtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgtgtgtaaagag |
32802351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 536 - 717
Target Start/End: Complemental strand, 32801987 - 32801804
Alignment:
| Q |
536 |
attaaccacaaaaattaaaggagaataaaacttcgttttctattttggtaaagtatattataatgtaaaaaattgatgagataatgtaagagttgtttta |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
32801987 |
attaaccacaaaaattaaaggagaataaaacttcgttttctattttggtaaagtatattataatgtaaaaaattgatgagatgatgtaagagttgcttta |
32801888 |
T |
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| Q |
636 |
ggtagctannnnnnnctcacctccacaagtaaacttcggatgaat--aaataaaagaaactatacgtgacaaacatttaaaaaa |
717 |
Q |
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| T |
32801887 |
ggtagctatttttttctcacctccacaagtaaacttcggatgaataaaaataaaagaaactatacgtgacaaacatttaaaaaa |
32801804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 260 - 407
Target Start/End: Complemental strand, 32802280 - 32802130
Alignment:
| Q |
260 |
agaagccagacaa---gtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattagagtttc |
356 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802280 |
agaagccagacaattagtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattagagtttc |
32802181 |
T |
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| Q |
357 |
gtgtgctgattaatcatgatatgcactaccccttaatgattatttcttctt |
407 |
Q |
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| T |
32802180 |
gtgtgctgattaatcatgatatgcactaccccttaatgattatttcttctt |
32802130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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